Strain Fitness in Pseudomonas putida KT2440 around PP_0345

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0343 and PP_0344 overlap by 4 nucleotidesPP_0344 and PP_0345 overlap by 1 nucleotidesPP_0345 and PP_0346 overlap by 4 nucleotidesPP_0346 and PP_0347 overlap by 1 nucleotides PP_0343: PP_0343 - lipopolysaccharide glucosyltransferase I, at 416,291 to 417,415 _0343 PP_0344: PP_0344 - lipopolysaccharide core heptose (I) kinase, at 417,412 to 418,218 _0344 PP_0345: PP_0345 - putative Heptose kinase WapP, at 418,218 to 418,952 _0345 PP_0346: PP_0346 - putative Heptose kinase WapQ, at 418,949 to 419,701 _0346 PP_0347: PP_0347 - conserved protein of unknown function, at 419,701 to 421,143 _0347 Position (kb) 418 419Strain fitness (log2 ratio) -2 -1 0 1at 418.362 kb on + strand, within PP_0345at 418.362 kb on + strand, within PP_0345at 418.362 kb on + strand, within PP_0345at 418.365 kb on + strand, within PP_0345at 418.365 kb on + strand, within PP_0345at 418.365 kb on + strand, within PP_0345at 418.377 kb on + strand, within PP_0345at 418.732 kb on + strand, within PP_0345at 418.872 kb on + strand, within PP_0345at 418.872 kb on + strand, within PP_0345at 419.111 kb on + strand, within PP_0346at 419.111 kb on + strand, within PP_0346at 419.111 kb on + strand, within PP_0346at 419.111 kb on + strand, within PP_0346at 419.114 kb on + strandat 419.114 kb on + strand, within PP_0346at 419.114 kb on + strand, within PP_0346at 419.114 kb on + strand, within PP_0346at 419.114 kb on + strand, within PP_0346at 419.135 kb on + strand, within PP_0346at 419.146 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.599 kb on + strand, within PP_0346at 419.599 kb on + strand, within PP_0346at 419.615 kb on + strand, within PP_0346at 419.615 kb on + strand, within PP_0346at 419.615 kb on + strand, within PP_0346

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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418,362 + PP_0345 0.20 -0.0
418,362 + PP_0345 0.20 +0.9
418,362 + PP_0345 0.20 -2.0
418,365 + PP_0345 0.20 -1.5
418,365 + PP_0345 0.20 +1.5
418,365 + PP_0345 0.20 +0.4
418,377 + PP_0345 0.22 +1.7
418,732 + PP_0345 0.70 +0.7
418,872 + PP_0345 0.89 +1.5
418,872 + PP_0345 0.89 -0.3
419,111 + PP_0346 0.22 -0.3
419,111 + PP_0346 0.22 +0.2
419,111 + PP_0346 0.22 -0.7
419,111 + PP_0346 0.22 -1.7
419,114 + -0.0
419,114 + PP_0346 0.22 +0.2
419,114 + PP_0346 0.22 -0.1
419,114 + PP_0346 0.22 +0.5
419,114 + PP_0346 0.22 -1.0
419,135 + PP_0346 0.25 -0.4
419,146 + PP_0346 0.26 -0.5
419,595 + PP_0346 0.86 +0.3
419,595 + PP_0346 0.86 -2.5
419,595 + PP_0346 0.86 -0.4
419,595 + PP_0346 0.86 +0.2
419,595 + PP_0346 0.86 -0.7
419,595 + PP_0346 0.86 -0.5
419,595 + PP_0346 0.86 -0.0
419,599 + PP_0346 0.86 -0.3
419,599 + PP_0346 0.86 -0.5
419,615 + PP_0346 0.88 +0.3
419,615 + PP_0346 0.88 -0.9
419,615 + PP_0346 0.88 -0.1

Or see this region's nucleotide sequence