Strain Fitness in Pseudomonas putida KT2440 around PP_0051

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
58,451	+				-0.4
58,451	+				+0.3
58,452	-				+0.1
58,501	+				-0.3
58,501	+				-0.1
58,502	-				-0.0
58,502	-				-1.2
58,502	-				-0.5
58,508	+				+0.1
58,508	+				-0.2
58,508	+				-1.0
58,508	+				-0.5
58,509	-				+0.0
58,509	-				-0.0
58,509	-				-0.3
58,526	-				-0.6
58,607	-				-0.2
58,698	+				-0.1
58,699	-				+0.7
58,711	+				-0.1
58,711	+				+0.9
58,712	-				+0.2
58,712	-				+1.3
58,712	-				-0.6
58,720	+				-0.9
58,736	-				-0.5
58,781	+				-0.1
58,832	+		PP_0050	0.13	+1.3
58,847	+		PP_0050	0.17	-0.4
58,847	+		PP_0050	0.17	-0.5
58,847	+		PP_0050	0.17	+0.2
58,847	+		PP_0050	0.17	+0.3
58,848	-		PP_0050	0.17	+0.0
58,848	-		PP_0050	0.17	+0.4
58,848	-		PP_0050	0.17	+0.2
58,877	+		PP_0050	0.25	+0.0
58,878	-		PP_0050	0.25	+0.3
58,878	-		PP_0050	0.25	-0.7
58,878	-		PP_0050	0.25	-0.4
58,904	-		PP_0050	0.31	-0.6
58,925	+		PP_0050	0.36	+0.4
58,962	+		PP_0050	0.45	+1.0
58,962	+		PP_0050	0.45	-0.9
58,963	-		PP_0050	0.46	+0.7
58,963	-		PP_0050	0.46	-0.3
58,969	+		PP_0050	0.47	+0.7
58,969	+		PP_0050	0.47	+0.5
59,207	+				+1.2
59,208	-				+0.4
59,222	+				+0.4
59,222	+				-0.4
59,223	-				-0.1
59,347	+				+0.4
59,564	+		PP_0051	0.19	+0.9
59,564	+		PP_0051	0.19	+1.0
59,731	+		PP_0051	0.32	+0.3
59,731	+		PP_0051	0.32	+2.0
59,731	+		PP_0051	0.32	+1.1
59,732	-		PP_0051	0.32	+0.4
59,732	-		PP_0051	0.32	-0.0
59,732	-		PP_0051	0.32	-0.3
59,732	-		PP_0051	0.32	-0.5
59,771	+		PP_0051	0.35	+0.1
59,771	+		PP_0051	0.35	+0.4
59,780	+		PP_0051	0.36	+0.7
59,780	+		PP_0051	0.36	-2.2
59,856	+		PP_0051	0.42	+0.5
59,857	-		PP_0051	0.42	+0.8
59,857	-		PP_0051	0.42	+0.3
60,270	+		PP_0051	0.74	+1.0
60,270	+		PP_0051	0.74	+1.0
60,270	+		PP_0051	0.74	-0.1
60,270	+		PP_0051	0.74	+0.6
60,427	+		PP_0051	0.86	+0.1
60,428	-		PP_0051	0.86	-0.0
60,496	+				+0.5
60,496	+				-0.3
60,523	+				+0.1
60,523	+				+0.0
60,523	+				+0.2
60,524	-				-0.2
60,524	-				+0.3
60,568	+				-0.7
60,568	+				-1.1
60,569	-				+0.3
60,583	-				+0.9
60,583	-				-0.4
60,583	-				-0.7
60,619	+				+0.0
60,619	+				-1.4
60,620	-				+1.3
60,620	-				-0.9
60,620	-				-0.4
60,772	+				+0.8
60,773	-				+0.8
60,791	+				+0.3
60,791	+				+0.8
60,791	+				+0.8
60,792	-				-0.7
60,799	+				-0.1
60,799	+				+1.7
60,799	+				-0.2
60,800	-				+0.0
60,800	-				+0.5
60,894	+				-0.4
60,895	-				+0.5
60,952	-				+0.3
61,051	-		PP_0052	0.25	+0.6
61,054	+		PP_0052	0.25	+0.2
61,054	+		PP_0052	0.25	+0.3
61,054	+		PP_0052	0.25	+0.1
61,130	+		PP_0052	0.34	-0.8
61,130	+		PP_0052	0.34	-1.0
61,359	+		PP_0052	0.60	+0.1
61,360	-		PP_0052	0.60	+0.2
61,360	-		PP_0052	0.60	-0.3
61,407	+		PP_0052	0.65	+0.2
61,470	+		PP_0052	0.72	+0.8
61,471	-		PP_0052	0.72	-0.6
61,497	+		PP_0052	0.75	+0.0
61,497	+		PP_0052	0.75	-0.5
61,498	-		PP_0052	0.75	+0.5
61,498	-		PP_0052	0.75	+0.1
61,498	-		PP_0052	0.75	+0.6
61,498	-		PP_0052	0.75	-0.5
61,498	-		PP_0052	0.75	+0.2
61,498	-				-1.2
61,498	-		PP_0052	0.75	-0.1
61,498	-		PP_0052	0.75	-0.1