Strain Fitness in Pseudomonas putida KT2440 around PP_5696

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,150,523	-		PP_4535	0.53	-1.3
5,150,578	+		PP_4535	0.56	+0.2
5,150,578	+		PP_4535	0.56	+0.7
5,150,579	-		PP_4535	0.56	-1.2
5,150,579	-		PP_4535	0.56	+1.2
5,150,723	+		PP_4535	0.63	-0.6
5,150,723	+		PP_4535	0.63	-1.2
5,150,723	+		PP_4535	0.63	+0.2
5,150,723	+		PP_4535	0.63	-0.5
5,150,724	-		PP_4535	0.63	+0.0
5,150,756	+		PP_4535	0.65	-0.9
5,150,756	+		PP_4535	0.65	-0.4
5,150,756	+		PP_4535	0.65	+1.0
5,150,756	+		PP_4535	0.65	-0.6
5,150,756	+		PP_4535	0.65	+0.6
5,150,756	+		PP_4535	0.65	+0.4
5,150,757	-		PP_4535	0.65	-1.4
5,150,757	-		PP_4535	0.65	+1.4
5,150,757	-		PP_4535	0.65	-1.8
5,150,813	+		PP_4535	0.67	-0.2
5,150,814	-		PP_4535	0.67	+0.2
5,150,849	+		PP_4535	0.69	-0.1
5,150,927	+		PP_4535	0.73	-2.3
5,151,074	+		PP_4535	0.80	+0.3
5,151,075	-		PP_4535	0.80	+0.9
5,151,075	-		PP_4535	0.80	-0.8
5,151,075	-		PP_4535	0.80	-1.5
5,151,075	-		PP_4535	0.80	-0.9
5,151,075	-		PP_4535	0.80	-1.3
5,151,075	-		PP_4535	0.80	-1.4
5,151,193	+		PP_4535	0.86	+0.2
5,151,193	+		PP_4535	0.86	+0.2
5,151,193	+		PP_4535	0.86	+1.4
5,151,194	-		PP_4535	0.86	-1.8
5,151,194	-		PP_4535	0.86	-0.9
5,151,194	-		PP_4535	0.86	-0.2
5,151,194	-		PP_4535	0.86	-1.2
5,151,226	+		PP_4535	0.88	+2.0
5,151,226	+		PP_4535	0.88	+0.1
5,151,226	+		PP_4535	0.88	-0.7
5,151,227	-		PP_4535	0.88	-1.0
5,151,269	+				+0.2
5,151,269	+				-0.6
5,151,269	+				-2.3
5,151,269	+				-0.4
5,151,269	+				-2.4
5,151,270	-				-2.4
5,151,270	-				+1.2
5,151,340	-				-0.1
5,151,357	+				+0.0
5,151,406	+				-0.2
5,151,407	-				-1.8
5,151,423	+				+1.3
5,151,424	-				-1.0
5,151,434	-				+0.6
5,151,451	+				-0.5
5,151,452	-				-0.5
5,151,452	-				+0.5
5,151,455	+				-0.2
5,151,455	+				+1.5
5,151,490	+				+1.7
5,151,491	-				+0.4
5,151,494	+				-1.2
5,151,494	+				+0.7
5,151,494	+				-0.8
5,151,495	-				-1.2
5,151,495	-				-0.2
5,151,495	-				+0.7
5,151,541	+		PP_5696	0.17	-0.6
5,151,542	-		PP_5696	0.17	+1.5
5,151,778	+		PP_5696	0.68	+1.5
5,151,778	+		PP_5696	0.68	-0.1
5,151,779	-		PP_5696	0.69	+1.5
5,151,779	-		PP_5696	0.69	-0.3
5,151,802	+		PP_5696	0.74	+0.2
5,151,803	-		PP_5696	0.74	+1.2
5,151,844	+		PP_5696	0.83	+0.7
5,151,858	+		PP_5696	0.86	-1.3
5,151,858	+		PP_5696	0.86	-0.1
5,151,858	+		PP_5696	0.86	-1.9
5,151,895	+				-0.1
5,151,897	+				+1.7
5,151,897	+				+1.5
5,151,897	+				+0.0
5,151,897	+				-0.2
5,151,897	+				+0.7
5,151,897	+				+1.1
5,151,897	+				+0.5
5,151,897	+				+1.1
5,151,897	+				-0.6
5,151,897	+				-0.7
5,151,897	+				+0.3
5,151,897	+				-0.0
5,151,897	+				+0.2
5,151,897	+				-1.4
5,151,897	+				+1.1
5,151,897	+				+2.2
5,151,897	+				-0.6
5,151,898	-				-1.7
5,151,898	-				-0.5
5,151,898	-				+0.8
5,151,898	-				-1.8
5,151,898	-				-0.1
5,151,898	-				+0.8
5,151,898	-				+1.1
5,151,987	+				+0.6
5,151,988	-				-1.8
5,151,988	-				+0.9
5,151,988	-				+0.5
5,152,061	-				+0.6
5,152,088	+				+1.9
5,152,089	-				-1.7
5,152,089	-				-0.9
5,152,099	+				+0.5
5,152,099	+				+1.8
5,152,105	+				-0.5
5,152,143	+				-1.6
5,152,143	+				+1.4
5,152,173	+				+1.2
5,152,186	+				-1.5
5,152,186	+				+0.0
5,152,186	+				-1.1
5,152,187	-				-1.2
5,152,187	-				+0.3
5,152,187	-				-1.5
5,152,187	-				+0.3
5,152,212	+				-0.3
5,152,287	+				-0.1
5,152,287	+				-0.2
5,152,287	+				+0.1
5,152,287	+				+0.1
5,152,288	-				-1.9
5,152,288	-				-0.6
5,152,288	-				-0.4
5,152,298	-				-0.2
5,152,298	-				-0.9
5,152,298	-				+0.2
5,152,306	+				+0.5
5,152,307	-				-0.4
5,152,381	+				+0.9
5,152,382	-				-0.1
5,152,427	-				+0.7
5,152,427	-				-0.5
5,152,456	+				-0.1
5,152,456	+				+1.2
5,152,456	+				+0.8
5,152,456	+				+0.8
5,152,492	+				-1.1
5,152,492	+				+0.0
5,152,492	+				-0.6
5,152,492	+				-0.4
5,152,492	+				+2.6
5,152,493	-				-1.4
5,152,495	+				-2.3
5,152,495	+				+2.2
5,152,495	+				+4.1
5,152,495	+				+0.0
5,152,496	-				-2.1
5,152,496	-				-0.1
5,152,568	-				+0.8
5,152,568	-				+0.2
5,152,756	-				-1.4