Strain Fitness in Pseudomonas putida KT2440 around PP_5499

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,324,048	+		PP_2043	0.55	+0.3
2,324,049	-		PP_2043	0.55	+0.5
2,324,249	+		PP_2043	0.70	+3.5
2,324,297	+		PP_2043	0.74	-0.2
2,324,353	+		PP_2043	0.78	-0.1
2,324,353	+		PP_2043	0.78	+0.6
2,324,353	+		PP_2043	0.78	+1.2
2,324,353	+		PP_2043	0.78	+0.6
2,324,353	+		PP_2043	0.78	-0.0
2,324,353	+		PP_2043	0.78	-1.7
2,324,353	+		PP_2043	0.78	+0.1
2,324,353	+		PP_2043	0.78	-1.7
2,324,354	-		PP_2043	0.78	-0.2
2,324,354	-		PP_2043	0.78	-2.6
2,324,354	-		PP_2043	0.78	+2.1
2,324,354	-		PP_2043	0.78	-0.4
2,324,354	-		PP_2043	0.78	-1.1
2,324,354	-		PP_2043	0.78	+0.3
2,324,354	-		PP_2043	0.78	+0.7
2,324,354	-		PP_2043	0.78	+1.9
2,324,354	-		PP_2043	0.78	+0.8
2,324,354	-		PP_2043	0.78	-2.2
2,324,354	-		PP_2043	0.78	+0.3
2,324,354	-		PP_2043	0.78	-1.4
2,324,356	-		PP_2043	0.78	-0.8
2,324,357	+		PP_2043	0.79	-0.2
2,324,357	+		PP_2043	0.79	-0.2
2,324,358	-		PP_2043	0.79	-0.2
2,324,358	-		PP_2043	0.79	+0.4
2,324,376	-		PP_2043	0.80	+0.2
2,324,417	+		PP_2043	0.83	-1.7
2,324,510	+				+0.3
2,324,511	-				-2.3
2,324,531	+				+1.7
2,324,733	+		PP_2044	0.24	-1.3
2,324,733	+		PP_2044	0.24	-2.1
2,325,125	+		PP_5499	0.36	-0.8
2,325,125	+		PP_5499	0.36	+1.3
2,325,125	+		PP_5499	0.36	+1.6
2,325,125	+		PP_5499	0.36	-1.3
2,325,125	+		PP_5499	0.36	+1.4
2,325,126	-		PP_5499	0.36	+0.4
2,325,513	+				-1.6
2,325,514	-				+0.9
2,325,514	-				-2.4
2,325,581	-		PP_2045	0.12	+0.5
2,325,640	+				+1.8
2,325,641	-		PP_2045	0.15	-0.2
2,325,641	-		PP_2045	0.15	-1.9
2,325,641	-		PP_2045	0.15	-1.4
2,325,664	+		PP_2045	0.16	-0.1
2,325,772	+		PP_2045	0.22	+0.3
2,325,772	+		PP_2045	0.22	+0.6
2,325,973	+		PP_2045	0.32	-0.9
2,326,042	+		PP_2045	0.36	+2.1
2,326,043	-		PP_2045	0.36	-0.8
2,326,043	-		PP_2045	0.36	-0.3
2,326,051	+		PP_2045	0.36	+0.6
2,326,051	+		PP_2045	0.36	+1.4
2,326,085	-		PP_2045	0.38	-0.2
2,326,085	-				+0.9
2,326,085	-		PP_2045	0.38	+1.3
2,326,085	-		PP_2045	0.38	-1.3
2,326,085	-		PP_2045	0.38	+0.0
2,326,085	-		PP_2045	0.38	-0.5
2,326,100	-		PP_2045	0.39	-0.4
2,326,207	+		PP_2045	0.44	-0.9
2,326,207	+		PP_2045	0.44	-1.9
2,326,207	+		PP_2045	0.44	+0.3
2,326,207	+		PP_2045	0.44	-2.2
2,326,207	+		PP_2045	0.44	-0.1
2,326,207	+		PP_2045	0.44	-0.5
2,326,208	-		PP_2045	0.44	+1.6
2,326,208	-		PP_2045	0.44	+1.6
2,326,208	-		PP_2045	0.44	-1.3
2,326,208	-		PP_2045	0.44	-0.1
2,326,208	-		PP_2045	0.44	+0.5
2,326,208	-		PP_2045	0.44	+0.8
2,326,208	-		PP_2045	0.44	-2.7
2,326,211	+		PP_2045	0.44	-1.0
2,326,211	+		PP_2045	0.44	+0.1
2,326,211	+		PP_2045	0.44	+0.1
2,326,212	-		PP_2045	0.44	+0.9
2,326,212	-		PP_2045	0.44	-2.0
2,326,231	+		PP_2045	0.45	-0.1
2,326,231	+		PP_2045	0.45	+0.6
2,326,232	-		PP_2045	0.45	+0.9