Strain Fitness in Pseudomonas putida KT2440 around PP_5426

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
106,850	+		PP_0101	0.47	+0.9
106,851	-		PP_0101	0.47	+0.2
106,921	+		PP_0101	0.52	-1.0
106,921	+		PP_0101	0.52	+0.5
107,030	-		PP_0101	0.59	+0.9
107,250	-		PP_0101	0.74	-1.0
107,254	-		PP_0101	0.74	+2.0
107,276	+		PP_0101	0.75	+1.1
107,302	+		PP_0101	0.77	-1.0
107,302	+		PP_0101	0.77	-0.1
107,303	-		PP_0101	0.77	+0.8
107,303	-		PP_0101	0.77	+3.1
107,460	-		PP_0101	0.87	-0.8
107,508	+				-0.2
107,508	+				-0.8
107,509	-				+0.1
107,509	-				+0.4
107,509	-				+0.4
107,509	-				+1.0
107,510	+				-1.2
107,511	-				+0.0
107,511	-				-2.1
107,511	-				+0.2
107,555	+				+0.4
107,555	+				+1.2
107,650	-				-0.2
107,672	-				+0.4
107,749	+				-1.3
107,749	+				-0.4
107,749	+				-0.2
107,781	+				+0.8
107,795	+				-0.6
107,795	+				+0.4
107,795	+				-1.2
107,795	+				+0.0
107,795	+				-1.1
107,795	+				+0.4
107,795	+				+0.6
107,795	+				+0.6
107,796	-				+2.5
107,796	-				-1.4
107,796	-				-0.9
107,796	-				-0.2
107,796	-				+1.2
107,797	+				-1.0
107,798	-				+1.1
107,798	-				-1.2
107,798	-				-1.4
107,798	-				+0.4
107,798	-				-0.7
107,798	-				-2.5
107,896	+		PP_5426	0.15	-2.5
107,934	-		PP_5426	0.21	-0.9
107,934	-		PP_5426	0.21	-0.8
107,934	-		PP_5426	0.21	-0.5
107,934	-		PP_5426	0.21	-0.4
108,067	+		PP_5426	0.42	-1.3
108,068	-		PP_5426	0.42	-2.8
108,106	+		PP_5426	0.48	+1.3
108,107	-		PP_5426	0.48	+0.2
108,135	+		PP_5426	0.52	-1.0
108,135	+		PP_5426	0.52	-0.5
108,135	+		PP_5426	0.52	-2.9
108,135	+		PP_5426	0.52	-0.4
108,135	+		PP_5426	0.52	+0.2
108,136	-		PP_5426	0.52	+3.4
108,136	-		PP_5426	0.52	-1.7
108,136	-		PP_5426	0.52	-0.3
108,136	-		PP_5426	0.52	+1.1
108,172	+		PP_5426	0.58	-1.8
108,173	-		PP_5426	0.58	-0.3
108,192	+		PP_5426	0.61	-1.8
108,274	+		PP_5426	0.74	-1.9
108,274	+		PP_5426	0.74	+0.4
108,274	+		PP_5426	0.74	-2.0
108,275	-		PP_5426	0.74	+1.2
108,412	-				-0.9
108,412	-				-2.1
108,458	+				+0.4
108,458	+				-0.8
108,459	-				-0.2
108,459	-				+0.7
108,459	-				+0.4
108,459	-				+0.2
108,480	-				-1.6
108,485	-				-0.8
108,493	-				-2.2
108,494	+				-0.2
108,495	-				-0.2
108,513	-				-0.3
108,522	-				+0.9
108,522	-				-0.7
108,522	-				+1.2
108,566	+				+2.9
108,567	-				-0.4
108,664	+				+0.1
108,665	-				-0.4
108,665	-				-0.0
108,665	-				-1.5
108,665	-				+0.2
108,666	+				-1.1
108,667	-				+0.3
108,667	-				-0.2
108,667	-				+0.1
108,709	+				+0.6
108,709	+				-0.7
108,710	-				-0.2
108,710	-				-1.0
108,794	-				+0.3
108,794	-				-0.5
108,794	-				-1.2
109,121	+		PP_0103	0.28	-1.2
109,143	+		PP_0103	0.30	-0.5
109,143	+		PP_0103	0.30	-0.5
109,143	+		PP_0103	0.30	+2.0
109,144	-		PP_0103	0.30	+0.6
109,144	-		PP_0103	0.30	-0.6
109,144	-		PP_0103	0.30	+0.8
109,144	-		PP_0103	0.30	-1.1
109,203	+		PP_0103	0.35	+1.4
109,204	-		PP_0103	0.35	+0.1
109,294	-		PP_0103	0.43	-0.2