Strain Fitness in Pseudomonas putida KT2440 around PP_5328

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
6,073,290	-		PP_5327	0.42	+0.4
6,073,462	-		PP_5327	0.52	+0.0
6,073,826	-		PP_5327	0.74	+1.1
6,073,826	-		PP_5327	0.74	+1.7
6,073,832	-		PP_5327	0.75	+1.5
6,073,832	-		PP_5327	0.75	-0.3
6,073,832	-		PP_5327	0.75	+0.5
6,073,832	-		PP_5327	0.75	+1.0
6,073,948	-		PP_5327	0.82	+2.1
6,073,948	-		PP_5327	0.82	-0.1
6,073,948	-		PP_5327	0.82	-0.1
6,074,029	-		PP_5327	0.86	+0.5
6,074,090	-				+0.2
6,074,090	-				-0.4
6,074,090	-				+0.8
6,074,272	-				+1.6
6,074,740	-		PP_5328	0.20	-0.3
6,074,740	-		PP_5328	0.20	-0.0
6,074,751	-		PP_5328	0.21	-0.2
6,074,751	-		PP_5328	0.21	+0.5
6,074,883	-		PP_5328	0.27	+1.5
6,075,103	-		PP_5328	0.36	+2.2
6,075,112	-		PP_5328	0.37	+1.0
6,075,112	-		PP_5328	0.37	+0.3
6,075,157	-		PP_5328	0.39	+2.3
6,076,438	-				+1.0
6,076,598	-				-1.5
6,076,598	-				-0.6
6,076,598	-				+2.2
6,076,693	+				+0.7
6,076,693	+				-1.8
6,076,693	+				+1.6
6,076,697	+				+0.2
6,076,697	+				-0.6
6,076,697	+				-1.0
6,076,697	+				-2.1
6,076,698	-				+1.6
6,076,698	-				-0.3
6,076,698	-				+0.6
6,076,701	+				-0.2
6,076,701	+				-0.0
6,076,702	-				-0.3
6,076,702	-				+0.1
6,076,702	-				+0.8
6,076,782	+				-0.3
6,076,782	+				+1.5
6,076,782	+				+0.1
6,076,783	-				+3.1
6,076,864	-		PP_5329	0.16	+0.2
6,076,884	+		PP_5329	0.18	+3.5
6,077,004	+		PP_5329	0.30	+1.4
6,077,004	+		PP_5329	0.30	+0.7
6,077,005	-		PP_5329	0.31	+1.5
6,077,090	-		PP_5329	0.39	+3.5
6,077,130	+		PP_5329	0.43	-0.4
6,077,131	-		PP_5329	0.43	+1.2
6,077,131	-		PP_5329	0.43	+1.5
6,077,136	+		PP_5329	0.44	+0.5
6,077,136	+		PP_5329	0.44	+2.9
6,077,136	+		PP_5329	0.44	-0.5
6,077,136	+		PP_5329	0.44	+4.5
6,077,137	-		PP_5329	0.44	+1.0
6,077,361	+		PP_5329	0.66	+0.2
6,077,368	-		PP_5329	0.67	+2.9
6,077,368	-		PP_5329	0.67	+1.9
6,077,492	+		PP_5329	0.79	+0.5
6,077,514	+		PP_5329	0.81	+0.9
6,077,515	-		PP_5329	0.82	+3.5
6,077,515	-		PP_5329	0.82	+0.4