Strain Fitness in Pseudomonas putida KT2440 around PP_5169

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,893,481	+				-0.4
5,893,481	+				-2.0
5,893,481	+				-0.8
5,893,481	+				-0.3
5,893,481	+				+1.2
5,893,481	+				+1.3
5,893,482	-				-0.5
5,893,482	-				+0.2
5,893,482	-				+0.2
5,893,482	-				+0.0
5,893,482	-				+2.2
5,893,482	-				+0.4
5,893,482	-				-0.1
5,893,485	+				-0.2
5,893,486	-				+1.2
5,893,770	-		PP_5168	0.29	+0.3
5,893,796	+		PP_5168	0.32	-1.2
5,893,797	-		PP_5168	0.32	+1.0
5,894,222	+		PP_5168	0.75	+1.0
5,894,409	+				+0.0
5,894,410	-				+0.0
5,894,452	-				-1.9
5,894,505	+				+0.7
5,894,508	+				+0.8
5,894,509	-				+0.9
5,894,509	-				+0.9
5,894,597	+		PP_5169	0.14	-1.0
5,894,597	+		PP_5169	0.14	+0.9
5,894,598	-		PP_5169	0.14	+0.0
5,894,598	-		PP_5169	0.14	-0.5
5,894,598	-		PP_5169	0.14	+0.2
5,894,598	-		PP_5169	0.14	+0.5
5,894,607	-				+1.7
5,894,703	+		PP_5169	0.26	+0.5
5,894,704	-		PP_5169	0.26	-1.5
5,894,720	+		PP_5169	0.28	+0.5
5,894,860	+		PP_5169	0.44	+1.1
5,894,908	+		PP_5169	0.50	+0.9
5,894,908	+		PP_5169	0.50	-0.0
5,894,908	+		PP_5169	0.50	+0.9
5,894,909	-		PP_5169	0.50	+2.4
5,894,909	-		PP_5169	0.50	+1.9
5,894,909	-		PP_5169	0.50	+0.6
5,894,909	-		PP_5169	0.50	-1.4
5,894,909	-		PP_5169	0.50	+0.2
5,894,917	-		PP_5169	0.51	+0.3
5,894,972	+		PP_5169	0.57	+1.0
5,894,972	+		PP_5169	0.57	+0.2
5,894,972	+		PP_5169	0.57	-0.3
5,895,053	+		PP_5169	0.66	-0.1
5,895,054	-		PP_5169	0.67	-0.5
5,895,054	-		PP_5169	0.67	+1.1
5,895,089	-		PP_5169	0.71	+1.3
5,895,089	-		PP_5169	0.71	-1.3
5,895,089	-		PP_5169	0.71	-0.6
5,895,089	-		PP_5169	0.71	+0.3
5,895,111	+		PP_5169	0.73	+1.2
5,895,112	-				+0.7
5,895,209	-		PP_5169	0.84	+0.2
5,895,273	+				+1.5
5,895,274	-				+0.7
5,895,455	-		PP_5170	0.12	+1.2
5,895,455	-		PP_5170	0.12	-0.9
5,895,455	-		PP_5170	0.12	-2.5
5,895,460	+		PP_5170	0.13	-0.2
5,895,460	+		PP_5170	0.13	-2.0
5,895,461	-		PP_5170	0.13	-0.5
5,895,917	-		PP_5170	0.68	-0.6
5,895,917	-		PP_5170	0.68	-0.6
5,895,945	-		PP_5170	0.72	-1.1
5,896,111	+				-0.0
5,896,112	-				+0.7
5,896,112	-				+0.5
5,896,112	-				-0.3
5,896,112	-				+1.2
5,896,123	+				-1.6
5,896,124	-				-1.3
5,896,163	+				-0.5
5,896,163	+				-0.4
5,896,164	-				-2.8
5,896,164	-				-0.6
5,896,164	-				-0.3
5,896,175	+				-0.3
5,896,175	+				-0.8
5,896,175	+				-0.0
5,896,175	+				+2.2
5,896,175	+				-1.7
5,896,175	+				-1.0
5,896,176	-				-1.9
5,896,176	-				+0.2
5,896,176	-				-0.5
5,896,176	-				-2.2
5,896,179	+				+0.0
5,896,180	-				-0.2
5,896,198	+				+0.0
5,896,198	+				-1.0
5,896,199	-				+0.3
5,896,199	-				+0.8