Strain Fitness in Pseudomonas putida KT2440 around PP_5121

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,841,888	-		PP_5120	0.32	+0.4
5,842,121	+		PP_5120	0.48	-2.2
5,842,215	+		PP_5120	0.55	-0.4
5,842,215	+		PP_5120	0.55	+0.6
5,842,215	+		PP_5120	0.55	+1.1
5,842,215	+		PP_5120	0.55	+0.7
5,842,216	-		PP_5120	0.55	+0.1
5,842,216	-		PP_5120	0.55	+1.4
5,842,216	-		PP_5120	0.55	-1.0
5,842,216	-		PP_5120	0.55	-0.2
5,842,219	+		PP_5120	0.55	-0.5
5,842,220	-		PP_5120	0.55	+0.1
5,842,220	-		PP_5120	0.55	-0.2
5,842,220	-		PP_5120	0.55	+1.2
5,842,260	+		PP_5120	0.58	-2.4
5,842,261	-		PP_5120	0.58	+1.5
5,842,391	-		PP_5120	0.67	-0.6
5,842,391	-		PP_5120	0.67	+1.2
5,842,401	+		PP_5120	0.68	+1.9
5,842,402	-		PP_5120	0.68	+1.4
5,842,501	+		PP_5120	0.75	+2.6
5,842,510	+		PP_5120	0.75	-0.1
5,842,518	+		PP_5120	0.76	-0.6
5,842,519	-				+1.4
5,842,519	-		PP_5120	0.76	-1.1
5,842,579	-		PP_5120	0.80	-0.7
5,842,655	+		PP_5120	0.85	-0.7
5,842,722	+				-1.3
5,842,722	+				+0.7
5,842,723	-				-0.9
5,843,255	+		PP_5121	0.79	-2.8
5,843,255	+		PP_5121	0.79	-2.0
5,843,256	-		PP_5121	0.79	-2.1
5,843,256	-		PP_5121	0.79	-0.3
5,843,302	+		PP_5121	0.88	+0.4
5,843,302	+		PP_5121	0.88	+1.7
5,843,545	+		PP_5122	0.10	+0.3
5,843,611	-		PP_5122	0.15	+0.1
5,843,623	-		PP_5122	0.15	+0.8
5,843,663	+		PP_5122	0.18	-0.4
5,843,664	-		PP_5122	0.18	+1.1
5,843,664	-		PP_5122	0.18	+1.2
5,844,005	+		PP_5122	0.39	-0.7
5,844,005	+		PP_5122	0.39	+1.4
5,844,005	+		PP_5122	0.39	+0.8
5,844,005	+				+0.8
5,844,005	+		PP_5122	0.39	-0.2
5,844,006	-		PP_5122	0.39	-2.2
5,844,008	-		PP_5122	0.39	-1.3
5,844,043	-		PP_5122	0.42	-0.5
5,844,043	-		PP_5122	0.42	-2.2
5,844,124	+		PP_5122	0.47	+0.2
5,844,124	+		PP_5122	0.47	+0.3
5,844,124	+		PP_5122	0.47	-0.8
5,844,125	-		PP_5122	0.47	+0.1
5,844,125	-		PP_5122	0.47	+0.7
5,844,165	+		PP_5122	0.49	-0.2
5,844,166	-		PP_5122	0.49	-0.8
5,844,166	-		PP_5122	0.49	-0.6
5,844,166	-		PP_5122	0.49	+0.1
5,844,186	-		PP_5122	0.50	-0.3
5,844,309	+		PP_5122	0.58	+0.8
5,844,309	+		PP_5122	0.58	-2.0
5,844,309	+		PP_5122	0.58	+0.4
5,844,310	-		PP_5122	0.58	-0.0
5,844,310	-		PP_5122	0.58	-0.7
5,844,310	-		PP_5122	0.58	-0.7
5,844,312	+		PP_5122	0.58	+0.2
5,844,312	+		PP_5122	0.58	-1.0
5,844,312	+		PP_5122	0.58	-0.8
5,844,313	-		PP_5122	0.58	-1.9
5,844,313	-		PP_5122	0.58	-0.6
5,844,313	-		PP_5122	0.58	-0.1
5,844,313	-		PP_5122	0.58	-0.1
5,844,313	-		PP_5122	0.58	+1.6
5,844,313	-		PP_5122	0.58	+0.0