Strain Fitness in Pseudomonas putida KT2440 around PP_5061

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,770,006	+		PP_5060	0.82	+0.4
5,770,083	+		PP_5060	0.83	+1.0
5,770,084	-		PP_5060	0.83	+0.7
5,770,084	-		PP_5060	0.83	-0.0
5,770,233	+		PP_5060	0.86	-0.2
5,770,233	+		PP_5060	0.86	+3.5
5,770,233	+		PP_5060	0.86	+1.2
5,770,234	-		PP_5060	0.86	+0.7
5,770,234	-		PP_5060	0.86	-1.1
5,770,234	-		PP_5060	0.86	+1.0
5,770,234	-		PP_5060	0.86	-3.0
5,770,409	-				+0.1
5,770,675	+				+0.4
5,770,676	-				+0.9
5,770,726	+				+1.2
5,770,761	+				+0.5
5,770,903	+				-1.1
5,770,903	+				-1.0
5,770,903	+				+0.7
5,770,903	+				-0.6
5,770,903	+				-0.5
5,770,904	-				-2.0
5,770,904	-				-0.0
5,770,904	-				-0.1
5,770,904	-				-1.0
5,770,904	-				+2.3
5,770,907	+				+0.1
5,770,907	+				-0.5
5,770,907	+				-0.6
5,770,907	+				+0.9
5,770,907	+				+0.1
5,770,908	-				-0.0
5,770,908	-				-0.2
5,770,964	+				-0.8
5,770,964	+				-0.9
5,770,964	+				-0.7
5,770,965	-				-0.3
5,770,966	+				-0.0
5,770,966	+				-1.1
5,770,967	-				-0.1
5,771,053	+				+0.5
5,771,054	-				-1.4
5,771,054	-				+0.4
5,771,077	+				+0.5
5,771,077	+				+0.2
5,771,078	-				-0.3
5,771,151	-				+0.5
5,771,151	-				-0.3
5,771,152	+				-0.6
5,771,152	+				+0.5
5,771,152	+				+1.1
5,771,152	+				-1.9
5,771,152	+				+2.5
5,771,153	-				+0.7
5,771,153	-				-1.9
5,771,153	-				+0.4
5,771,174	-		PP_5061	0.11	+0.1
5,771,446	+		PP_5061	0.24	-0.3
5,771,447	-		PP_5061	0.24	-0.6
5,771,447	-		PP_5061	0.24	+1.1
5,771,918	+		PP_5061	0.48	+0.4
5,771,971	+		PP_5061	0.50	+0.6
5,771,971	+		PP_5061	0.50	+1.5
5,771,971	+		PP_5061	0.50	-2.2
5,771,972	-		PP_5061	0.51	-1.0
5,771,972	-		PP_5061	0.51	+0.4
5,772,025	+		PP_5061	0.53	-0.7
5,772,026	-		PP_5061	0.53	-0.5
5,772,026	-		PP_5061	0.53	+0.2
5,772,026	-		PP_5061	0.53	+1.5
5,772,026	-		PP_5061	0.53	-0.9
5,772,026	-		PP_5061	0.53	+1.2
5,772,026	-		PP_5061	0.53	+0.2
5,772,026	-		PP_5061	0.53	+0.9
5,772,031	+		PP_5061	0.53	+0.2
5,772,031	+		PP_5061	0.53	-0.4
5,772,032	-		PP_5061	0.54	+0.1
5,772,032	-		PP_5061	0.54	+2.7
5,772,032	-		PP_5061	0.54	-1.3
5,772,032	-		PP_5061	0.54	+1.7
5,772,067	+		PP_5061	0.55	+0.7
5,772,068	-		PP_5061	0.55	+0.4
5,772,284	-		PP_5061	0.66	-0.8
5,772,284	-		PP_5061	0.66	-0.0
5,772,284	-		PP_5061	0.66	+0.7
5,772,300	+		PP_5061	0.67	+0.3
5,772,300	+		PP_5061	0.67	+0.8
5,772,301	-		PP_5061	0.67	-0.7
5,772,365	+		PP_5061	0.70	+0.4
5,772,419	-		PP_5061	0.73	+0.9
5,772,466	+		PP_5061	0.75	+1.2
5,772,467	-		PP_5061	0.75	+0.4
5,772,493	+		PP_5061	0.77	-0.8
5,772,494	-		PP_5061	0.77	-0.1
5,772,494	-		PP_5061	0.77	+1.3
5,772,494	-		PP_5061	0.77	+1.5
5,772,592	+		PP_5061	0.81	-2.8
5,772,592	+		PP_5061	0.81	-1.1
5,772,593	-		PP_5061	0.82	-1.2
5,772,622	+		PP_5061	0.83	+1.2
5,772,622	+		PP_5061	0.83	-0.7
5,772,636	-				+2.0
5,772,636	-		PP_5061	0.84	+0.9
5,772,676	+		PP_5061	0.86	+0.2
5,772,677	-		PP_5061	0.86	+0.1
5,772,725	-		PP_5061	0.88	-0.8
5,772,742	+		PP_5061	0.89	-1.9
5,772,742	+		PP_5061	0.89	-1.6
5,772,781	+				-1.2
5,772,781	+				-0.8
5,772,782	-				+1.4
5,772,782	-				-1.7
5,772,782	-				-2.1
5,772,782	-				-1.2
5,772,782	-				+1.0
5,772,782	-				-0.8
5,772,944	+				-0.0
5,772,944	+				+2.8
5,772,944	+				+0.4
5,772,945	-				+0.7
5,772,999	-				+1.2
5,773,049	+				+0.3
5,773,051	+				-1.9
5,773,051	+				+0.8
5,773,051	+				-0.2
5,773,051	+				-1.7
5,773,051	+				-0.1
5,773,085	+				-0.5
5,773,085	+				+0.5
5,773,086	-				+0.8
5,773,249	+				+0.6
5,773,250	-				-0.0
5,773,431	+				-0.2
5,773,432	-				-0.2
5,773,432	-				-1.2
5,773,453	-				+0.0
5,773,582	+		PP_5719	0.22	-0.8
5,773,624	+		PP_5719	0.28	+0.4
5,773,837	+		PP_5719	0.61	-0.7
5,773,879	+		PP_5719	0.67	+0.4
5,773,879	+		PP_5719	0.67	-0.4
5,773,880	-		PP_5719	0.67	+2.1
5,773,880	-		PP_5719	0.67	-2.8