Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5058 and PP_5059 are separated by 8 nucleotides PP_5059 and PP_5060 are separated by 43 nucleotides PP_5060 and PP_5061 are separated by 87 nucleotides
PP_5058: PP_5058 - Carboxy-terminal-processing protease, at 5,764,020 to 5,765,336
_5058
PP_5059: PP_5059 - conserved exported protein of unknown function, at 5,765,345 to 5,766,112
_5059
PP_5060: PP_5060 - conserved protein of unknown function, at 5,766,156 to 5,770,871
_5060
PP_5061: PP_5061 - Choline transporter, at 5,770,959 to 5,772,962
_5061
Position (kb) 5766
5767
5768
5769
5770
5771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5765.344 kb on + strand at 5765.344 kb on + strand at 5765.344 kb on + strand at 5765.345 kb on - strand at 5765.345 kb on - strand at 5765.345 kb on - strand at 5765.351 kb on + strand at 5765.352 kb on - strand at 5765.352 kb on - strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.418 kb on - strand at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.847 kb on + strand, within PP_5059 at 5765.847 kb on + strand, within PP_5059 at 5765.848 kb on - strand, within PP_5059 at 5765.859 kb on + strand, within PP_5059 at 5765.860 kb on - strand, within PP_5059 at 5765.860 kb on - strand, within PP_5059 at 5765.915 kb on - strand, within PP_5059 at 5765.915 kb on - strand, within PP_5059 at 5766.085 kb on + strand at 5766.085 kb on + strand at 5766.193 kb on + strand at 5766.212 kb on - strand at 5766.222 kb on + strand at 5766.222 kb on + strand at 5766.223 kb on - strand at 5766.223 kb on - strand at 5766.403 kb on + strand at 5766.416 kb on - strand at 5766.416 kb on - strand at 5766.448 kb on + strand at 5766.449 kb on - strand at 5766.449 kb on - strand at 5766.520 kb on + strand at 5766.678 kb on - strand, within PP_5060 at 5766.678 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.939 kb on + strand, within PP_5060 at 5766.940 kb on - strand, within PP_5060 at 5766.940 kb on - strand, within PP_5060 at 5766.986 kb on - strand, within PP_5060 at 5766.986 kb on - strand, within PP_5060 at 5767.060 kb on - strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.169 kb on - strand, within PP_5060 at 5767.169 kb on - strand, within PP_5060 at 5767.297 kb on + strand, within PP_5060 at 5767.297 kb on + strand, within PP_5060 at 5767.297 kb on + strand, within PP_5060 at 5767.297 kb on + strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.389 kb on - strand, within PP_5060 at 5767.389 kb on - strand, within PP_5060 at 5767.425 kb on - strand, within PP_5060 at 5767.433 kb on - strand, within PP_5060 at 5767.433 kb on - strand, within PP_5060 at 5767.433 kb on - strand, within PP_5060 at 5767.549 kb on + strand, within PP_5060 at 5767.549 kb on + strand, within PP_5060 at 5767.549 kb on + strand, within PP_5060 at 5767.549 kb on + strand, within PP_5060 at 5767.550 kb on - strand, within PP_5060 at 5767.606 kb on + strand, within PP_5060 at 5767.606 kb on + strand, within PP_5060 at 5767.607 kb on - strand, within PP_5060 at 5767.750 kb on + strand, within PP_5060 at 5767.750 kb on + strand, within PP_5060 at 5767.751 kb on - strand, within PP_5060 at 5767.751 kb on - strand, within PP_5060 at 5767.754 kb on + strand, within PP_5060 at 5767.754 kb on + strand, within PP_5060 at 5767.754 kb on + strand, within PP_5060 at 5767.755 kb on - strand, within PP_5060 at 5767.755 kb on - strand, within PP_5060 at 5767.777 kb on + strand, within PP_5060 at 5767.826 kb on + strand, within PP_5060 at 5767.827 kb on - strand, within PP_5060 at 5768.022 kb on - strand, within PP_5060 at 5768.022 kb on - strand, within PP_5060 at 5768.254 kb on + strand, within PP_5060 at 5768.254 kb on + strand, within PP_5060 at 5768.254 kb on + strand, within PP_5060 at 5768.255 kb on - strand, within PP_5060 at 5768.255 kb on - strand, within PP_5060 at 5768.260 kb on + strand, within PP_5060 at 5768.274 kb on + strand, within PP_5060 at 5768.580 kb on + strand, within PP_5060 at 5768.580 kb on + strand, within PP_5060 at 5768.693 kb on - strand, within PP_5060 at 5768.725 kb on - strand, within PP_5060 at 5768.923 kb on + strand, within PP_5060 at 5768.924 kb on - strand, within PP_5060 at 5768.924 kb on - strand, within PP_5060 at 5768.924 kb on - strand, within PP_5060 at 5768.977 kb on + strand, within PP_5060 at 5769.074 kb on - strand, within PP_5060 at 5769.081 kb on + strand, within PP_5060 at 5769.098 kb on - strand, within PP_5060 at 5769.109 kb on + strand, within PP_5060 at 5769.110 kb on - strand, within PP_5060 at 5769.339 kb on + strand, within PP_5060 at 5769.356 kb on + strand, within PP_5060 at 5769.356 kb on + strand, within PP_5060 at 5769.356 kb on + strand, within PP_5060 at 5769.357 kb on - strand, within PP_5060 at 5769.357 kb on - strand, within PP_5060 at 5769.410 kb on - strand, within PP_5060 at 5769.451 kb on + strand, within PP_5060 at 5769.452 kb on - strand, within PP_5060 at 5769.452 kb on - strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.769 kb on - strand, within PP_5060 at 5769.796 kb on + strand, within PP_5060 at 5769.796 kb on + strand, within PP_5060 at 5769.797 kb on - strand, within PP_5060 at 5769.797 kb on - strand, within PP_5060 at 5769.797 kb on - strand, within PP_5060 at 5769.919 kb on + strand, within PP_5060 at 5769.919 kb on + strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand at 5769.920 kb on - strand, within PP_5060 at 5770.006 kb on + strand, within PP_5060 at 5770.083 kb on + strand, within PP_5060 at 5770.084 kb on - strand, within PP_5060 at 5770.084 kb on - strand, within PP_5060 at 5770.233 kb on + strand, within PP_5060 at 5770.233 kb on + strand, within PP_5060 at 5770.233 kb on + strand, within PP_5060 at 5770.234 kb on - strand, within PP_5060 at 5770.234 kb on - strand, within PP_5060 at 5770.234 kb on - strand, within PP_5060 at 5770.234 kb on - strand, within PP_5060 at 5770.409 kb on - strand at 5770.675 kb on + strand at 5770.676 kb on - strand at 5770.726 kb on + strand at 5770.761 kb on + strand at 5770.903 kb on + strand at 5770.903 kb on + strand at 5770.903 kb on + strand at 5770.903 kb on + strand at 5770.903 kb on + strand at 5770.904 kb on - strand at 5770.904 kb on - strand at 5770.904 kb on - strand at 5770.904 kb on - strand at 5770.904 kb on - strand at 5770.907 kb on + strand at 5770.907 kb on + strand at 5770.907 kb on + strand at 5770.907 kb on + strand at 5770.907 kb on + strand at 5770.908 kb on - strand at 5770.908 kb on - strand at 5770.964 kb on + strand at 5770.964 kb on + strand at 5770.964 kb on + strand at 5770.965 kb on - strand at 5770.966 kb on + strand at 5770.966 kb on + strand at 5770.967 kb on - strand at 5771.053 kb on + strand at 5771.054 kb on - strand at 5771.054 kb on - strand at 5771.077 kb on + strand at 5771.077 kb on + strand at 5771.078 kb on - strand at 5771.151 kb on - strand at 5771.151 kb on - strand at 5771.152 kb on + strand at 5771.152 kb on + strand at 5771.152 kb on + strand at 5771.152 kb on + strand at 5771.152 kb on + strand at 5771.153 kb on - strand at 5771.153 kb on - strand at 5771.153 kb on - strand at 5771.174 kb on - strand, within PP_5061 at 5771.446 kb on + strand, within PP_5061 at 5771.447 kb on - strand, within PP_5061 at 5771.447 kb on - strand, within PP_5061
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 5,765,344 + +0.6 5,765,344 + +0.1 5,765,344 + -0.4 5,765,345 - -1.1 5,765,345 - +0.9 5,765,345 - -0.8 5,765,351 + -0.1 5,765,352 - +2.0 5,765,352 - +1.5 5,765,417 + -1.6 5,765,417 + +0.7 5,765,417 + -1.9 5,765,417 + +0.2 5,765,418 - -0.7 5,765,606 + PP_5059 0.34 -0.5 5,765,606 + PP_5059 0.34 +1.7 5,765,606 + PP_5059 0.34 +1.1 5,765,606 + PP_5059 0.34 +0.4 5,765,847 + PP_5059 0.65 -1.0 5,765,847 + PP_5059 0.65 -0.3 5,765,848 - PP_5059 0.65 -1.0 5,765,859 + PP_5059 0.67 -0.6 5,765,860 - PP_5059 0.67 -0.1 5,765,860 - PP_5059 0.67 -1.4 5,765,915 - PP_5059 0.74 +1.8 5,765,915 - PP_5059 0.74 -1.0 5,766,085 + -0.3 5,766,085 + -0.5 5,766,193 + -0.1 5,766,212 - -0.3 5,766,222 + -1.7 5,766,222 + -0.5 5,766,223 - +1.0 5,766,223 - -1.0 5,766,403 + -1.2 5,766,416 - +1.3 5,766,416 - +0.2 5,766,448 + +0.3 5,766,449 - -1.3 5,766,449 - -0.4 5,766,520 + -1.6 5,766,678 - PP_5060 0.11 +0.6 5,766,678 - PP_5060 0.11 -0.1 5,766,823 - PP_5060 0.14 -0.1 5,766,823 - PP_5060 0.14 -1.2 5,766,823 - PP_5060 0.14 +1.7 5,766,939 + PP_5060 0.17 -0.8 5,766,940 - PP_5060 0.17 +2.0 5,766,940 - PP_5060 0.17 +0.6 5,766,986 - PP_5060 0.18 -2.0 5,766,986 - PP_5060 0.18 -0.2 5,767,060 - PP_5060 0.19 +0.2 5,767,090 + PP_5060 0.20 +0.5 5,767,090 + PP_5060 0.20 +1.1 5,767,090 + PP_5060 0.20 -1.2 5,767,091 - PP_5060 0.20 -0.1 5,767,091 - PP_5060 0.20 -1.0 5,767,091 - PP_5060 0.20 +0.9 5,767,169 - PP_5060 0.21 -0.9 5,767,169 - PP_5060 0.21 -2.4 5,767,297 + PP_5060 0.24 -1.2 5,767,297 + PP_5060 0.24 -0.3 5,767,297 + PP_5060 0.24 -1.0 5,767,297 + PP_5060 0.24 +1.2 5,767,298 - PP_5060 0.24 -0.8 5,767,298 - PP_5060 0.24 -0.5 5,767,298 - PP_5060 0.24 +1.6 5,767,298 - PP_5060 0.24 -0.5 5,767,298 - PP_5060 0.24 +1.7 5,767,389 - PP_5060 0.26 +0.7 5,767,389 - PP_5060 0.26 -0.5 5,767,425 - PP_5060 0.27 -0.3 5,767,433 - PP_5060 0.27 +0.4 5,767,433 - PP_5060 0.27 -0.5 5,767,433 - PP_5060 0.27 -1.4 5,767,549 + PP_5060 0.30 -0.6 5,767,549 + PP_5060 0.30 -0.2 5,767,549 + PP_5060 0.30 -0.1 5,767,549 + PP_5060 0.30 +1.3 5,767,550 - PP_5060 0.30 -0.5 5,767,606 + PP_5060 0.31 +0.7 5,767,606 + PP_5060 0.31 -1.3 5,767,607 - PP_5060 0.31 -0.6 5,767,750 + PP_5060 0.34 +1.4 5,767,750 + PP_5060 0.34 -0.9 5,767,751 - PP_5060 0.34 +0.5 5,767,751 - PP_5060 0.34 +0.7 5,767,754 + PP_5060 0.34 -0.8 5,767,754 + PP_5060 0.34 -0.3 5,767,754 + PP_5060 0.34 -0.5 5,767,755 - PP_5060 0.34 -2.8 5,767,755 - PP_5060 0.34 +0.1 5,767,777 + PP_5060 0.34 -2.0 5,767,826 + PP_5060 0.35 -0.2 5,767,827 - PP_5060 0.35 -0.2 5,768,022 - PP_5060 0.40 +0.9 5,768,022 - PP_5060 0.40 +1.5 5,768,254 + PP_5060 0.44 +0.9 5,768,254 + PP_5060 0.44 -0.4 5,768,254 + PP_5060 0.44 +0.4 5,768,255 - PP_5060 0.45 -0.7 5,768,255 - PP_5060 0.45 -0.5 5,768,260 + PP_5060 0.45 +0.5 5,768,274 + PP_5060 0.45 +0.1 5,768,580 + PP_5060 0.51 -1.5 5,768,580 + PP_5060 0.51 -0.2 5,768,693 - PP_5060 0.54 +0.1 5,768,725 - PP_5060 0.54 +0.3 5,768,923 + PP_5060 0.59 -1.8 5,768,924 - PP_5060 0.59 +0.6 5,768,924 - PP_5060 0.59 -0.1 5,768,924 - PP_5060 0.59 +0.1 5,768,977 + PP_5060 0.60 -1.4 5,769,074 - PP_5060 0.62 +0.5 5,769,081 + PP_5060 0.62 +1.0 5,769,098 - PP_5060 0.62 +0.2 5,769,109 + PP_5060 0.63 -0.6 5,769,110 - PP_5060 0.63 +0.5 5,769,339 + PP_5060 0.67 -0.7 5,769,356 + PP_5060 0.68 +0.4 5,769,356 + PP_5060 0.68 +1.4 5,769,356 + PP_5060 0.68 +1.1 5,769,357 - PP_5060 0.68 +0.3 5,769,357 - PP_5060 0.68 +0.7 5,769,410 - PP_5060 0.69 -0.5 5,769,451 + PP_5060 0.70 +0.2 5,769,452 - PP_5060 0.70 +0.5 5,769,452 - PP_5060 0.70 -1.0 5,769,709 + PP_5060 0.75 +1.8 5,769,709 + PP_5060 0.75 +1.4 5,769,709 + PP_5060 0.75 -0.2 5,769,709 + PP_5060 0.75 +1.0 5,769,709 + PP_5060 0.75 +0.3 5,769,710 - PP_5060 0.75 +2.2 5,769,710 - PP_5060 0.75 -2.0 5,769,710 - PP_5060 0.75 +0.5 5,769,710 - PP_5060 0.75 +1.2 5,769,710 - PP_5060 0.75 +0.7 5,769,710 - PP_5060 0.75 +1.0 5,769,769 - PP_5060 0.77 -0.4 5,769,796 + PP_5060 0.77 +2.1 5,769,796 + PP_5060 0.77 -0.2 5,769,797 - PP_5060 0.77 +0.0 5,769,797 - PP_5060 0.77 +1.6 5,769,797 - PP_5060 0.77 +1.6 5,769,919 + PP_5060 0.80 +1.2 5,769,919 + PP_5060 0.80 -1.3 5,769,920 - PP_5060 0.80 -0.2 5,769,920 - PP_5060 0.80 -0.4 5,769,920 - PP_5060 0.80 -0.1 5,769,920 - PP_5060 0.80 -2.2 5,769,920 - PP_5060 0.80 -0.6 5,769,920 - +1.5 5,769,920 - PP_5060 0.80 +0.7 5,770,006 + PP_5060 0.82 +0.4 5,770,083 + PP_5060 0.83 +1.0 5,770,084 - PP_5060 0.83 +0.7 5,770,084 - PP_5060 0.83 -0.0 5,770,233 + PP_5060 0.86 -0.2 5,770,233 + PP_5060 0.86 +3.5 5,770,233 + PP_5060 0.86 +1.2 5,770,234 - PP_5060 0.86 +0.7 5,770,234 - PP_5060 0.86 -1.1 5,770,234 - PP_5060 0.86 +1.0 5,770,234 - PP_5060 0.86 -3.0 5,770,409 - +0.1 5,770,675 + +0.4 5,770,676 - +0.9 5,770,726 + +1.2 5,770,761 + +0.5 5,770,903 + -1.1 5,770,903 + -1.0 5,770,903 + +0.7 5,770,903 + -0.6 5,770,903 + -0.5 5,770,904 - -2.0 5,770,904 - -0.0 5,770,904 - -0.1 5,770,904 - -1.0 5,770,904 - +2.3 5,770,907 + +0.1 5,770,907 + -0.5 5,770,907 + -0.6 5,770,907 + +0.9 5,770,907 + +0.1 5,770,908 - -0.0 5,770,908 - -0.2 5,770,964 + -0.8 5,770,964 + -0.9 5,770,964 + -0.7 5,770,965 - -0.3 5,770,966 + -0.0 5,770,966 + -1.1 5,770,967 - -0.1 5,771,053 + +0.5 5,771,054 - -1.4 5,771,054 - +0.4 5,771,077 + +0.5 5,771,077 + +0.2 5,771,078 - -0.3 5,771,151 - +0.5 5,771,151 - -0.3 5,771,152 + -0.6 5,771,152 + +0.5 5,771,152 + +1.1 5,771,152 + -1.9 5,771,152 + +2.5 5,771,153 - +0.7 5,771,153 - -1.9 5,771,153 - +0.4 5,771,174 - PP_5061 0.11 +0.1 5,771,446 + PP_5061 0.24 -0.3 5,771,447 - PP_5061 0.24 -0.6 5,771,447 - PP_5061 0.24 +1.1
Or see this region's nucleotide sequence