Strain Fitness in Pseudomonas putida KT2440 around PP_5023

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,721,461	+				+0.5
5,721,461	+				-1.7
5,721,461	+				-0.3
5,721,461	+				-1.4
5,721,462	-				-1.7
5,721,462	-				-0.3
5,721,462	-				+0.6
5,721,530	+				-1.0
5,721,876	+		PP_5022	0.47	-2.5
5,721,877	-		PP_5022	0.47	-1.8
5,722,326	+				-0.3
5,722,326	+				-0.9
5,722,327	-				-0.6
5,722,327	-				-0.1
5,722,327	-				+2.2
5,722,361	-		PP_5023	0.11	-0.4
5,722,379	-		PP_5023	0.13	-0.7
5,722,379	-		PP_5023	0.13	+0.4
5,722,608	+		PP_5023	0.37	+0.6
5,722,609	-		PP_5023	0.37	+1.3
5,722,609	-		PP_5023	0.37	+0.5
5,722,609	-		PP_5023	0.37	-0.9
5,722,609	-		PP_5023	0.37	+1.1
5,722,609	-		PP_5023	0.37	+0.6
5,722,686	+		PP_5023	0.45	+1.0
5,722,686	+		PP_5023	0.45	-0.8
5,722,687	-		PP_5023	0.45	+0.3
5,722,687	-		PP_5023	0.45	-0.2
5,722,687	-		PP_5023	0.45	+0.3
5,722,738	-		PP_5023	0.50	-2.0
5,723,043	+		PP_5023	0.82	+2.7
5,723,077	-		PP_5023	0.85	+1.3
5,723,115	+		PP_5023	0.89	+3.2
5,723,139	+				-2.2
5,723,139	+				+0.8
5,723,139	+				+1.2
5,723,139	+				+0.6
5,723,139	+				+0.8
5,723,139	+				-0.3
5,723,140	-				+0.3
5,723,140	-				-0.1
5,723,140	-				+1.5
5,723,225	+				-0.6
5,723,233	+				-0.3
5,723,234	-				+1.0
5,723,274	-				-0.1
5,723,274	-				+0.3
5,723,299	+				-1.2
5,723,300	-				-0.3
5,723,348	+				-2.2
5,723,356	+				+2.2
5,723,356	+				-0.3
5,723,356	+				-0.7
5,723,357	-				-0.1
5,723,357	-				-0.5
5,723,414	-		PP_5024	0.14	-0.4
5,723,449	+		PP_5024	0.19	-1.2
5,723,516	-		PP_5024	0.27	-2.5
5,723,527	+		PP_5024	0.29	-0.2
5,723,597	-		PP_5024	0.37	-0.5
5,723,665	+		PP_5024	0.46	-1.6
5,723,689	+		PP_5024	0.49	-2.1
5,723,689	+		PP_5024	0.49	-1.4
5,723,689	+		PP_5024	0.49	+0.2
5,723,690	-		PP_5024	0.49	-0.8
5,723,854	+		PP_5024	0.69	-0.3
5,723,968	+		PP_5024	0.84	+0.9
5,723,968	+		PP_5024	0.84	+0.1
5,723,968	+		PP_5024	0.84	+0.6
5,723,969	-		PP_5024	0.84	+1.1
5,723,969	-		PP_5024	0.84	+1.4
5,723,969	-		PP_5024	0.84	+1.1
5,724,086	-				-2.3
5,724,133	+				+0.5
5,724,134	-				-0.6
5,724,134	-				-0.6
5,724,134	-				-0.5
5,724,134	-				+1.2
5,724,185	+				+1.7
5,724,185	+				+0.9