Strain Fitness in Pseudomonas putida KT2440 around PP_4999

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,694,635	-		PP_4998	0.36	+2.6
5,694,939	+				+2.6
5,695,191	+				+2.0
5,695,192	-				+0.4
5,695,192	-				+4.6
5,695,192	-				+3.6
5,695,289	-				+1.3
5,695,782	-		PP_4999	0.40	-0.5
5,695,782	-		PP_4999	0.40	+0.4
5,696,047	-		PP_4999	0.61	+3.6
5,696,047	-		PP_4999	0.61	+1.1
5,696,055	-		PP_4999	0.61	+2.3
5,696,511	-				+1.8
5,696,511	-				+0.0
5,696,513	-				+2.6
5,696,550	+				-0.1
5,696,550	+				+1.4
5,696,550	+				+0.2
5,696,551	-				+0.8
5,696,559	+				+0.1
5,696,609	+				+0.7
5,696,609	+				-0.5
5,696,649	+				-2.2
5,696,649	+				+0.2
5,696,650	-				+0.8
5,696,650	-				+0.8
5,696,650	-				-2.6
5,696,650	-				+0.3
5,696,711	+				-1.2
5,696,711	+				-1.9
5,696,712	-				-1.8
5,696,712	-				-1.6
5,697,012	-		PP_5000	0.47	+1.7
5,697,145	-		PP_5000	0.73	-1.1
5,697,360	-				+0.2
5,697,360	-				+1.7