Strain Fitness in Pseudomonas putida KT2440 around PP_4951

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,639,343	-		PP_4950	0.33	+0.5
5,639,452	+		PP_4950	0.41	-2.3
5,639,452	+		PP_4950	0.41	+1.8
5,639,453	-		PP_4950	0.41	-1.9
5,639,453	-		PP_4950	0.41	-1.7
5,639,453	-		PP_4950	0.41	-0.2
5,639,453	-		PP_4950	0.41	+1.5
5,639,453	-		PP_4950	0.41	+0.0
5,639,453	-		PP_4950	0.41	+1.2
5,639,453	-		PP_4950	0.41	+0.0
5,639,542	-		PP_4950	0.48	+1.2
5,639,570	-		PP_4950	0.50	+0.7
5,639,671	+		PP_4950	0.58	-0.7
5,639,671	+		PP_4950	0.58	-1.2
5,639,672	-		PP_4950	0.58	+1.1
5,639,733	+		PP_4950	0.62	+0.1
5,639,947	+		PP_4950	0.79	+0.2
5,639,947	+		PP_4950	0.79	-2.9
5,639,948	-		PP_4950	0.79	-1.9
5,639,974	+		PP_4950	0.81	+0.4
5,640,032	+		PP_4950	0.85	-0.4
5,640,063	+		PP_4950	0.87	-1.8
5,640,064	-		PP_4950	0.88	+0.7
5,640,064	-		PP_4950	0.88	+1.3
5,640,088	+		PP_4950	0.89	-0.0
5,640,089	-		PP_4950	0.89	-0.1
5,640,089	-		PP_4950	0.89	+0.9
5,640,089	-		PP_4950	0.89	-0.6
5,640,153	+				+0.0
5,640,154	-				+0.4
5,640,154	-				-0.2
5,640,157	+				-2.0
5,640,158	-				+2.8
5,640,158	-				-1.5
5,640,158	-				+0.6
5,640,301	-				+0.6
5,640,509	+		PP_4951	0.12	-0.5
5,640,509	+		PP_4951	0.12	-1.3
5,640,509	+		PP_4951	0.12	-0.1
5,640,510	-		PP_4951	0.12	-2.4
5,640,510	-		PP_4951	0.12	-0.8
5,640,510	-		PP_4951	0.12	-2.5
5,640,510	-		PP_4951	0.12	-0.4
5,640,510	-		PP_4951	0.12	+0.2
5,640,510	-		PP_4951	0.12	-1.7
5,640,510	-		PP_4951	0.12	+1.3
5,640,975	+		PP_4951	0.45	+0.0
5,640,976	-		PP_4951	0.45	-0.3
5,640,976	-		PP_4951	0.45	-0.4
5,641,232	+		PP_4951	0.63	+1.1
5,641,233	-		PP_4951	0.63	-0.0
5,641,348	+		PP_4951	0.71	-2.1
5,641,348	+		PP_4951	0.71	-0.7
5,641,349	-		PP_4951	0.71	+0.5
5,641,351	+		PP_4951	0.71	+0.0
5,641,352	-		PP_4951	0.71	-1.4
5,641,601	-		PP_4951	0.88	-0.3
5,641,674	+				+2.0
5,641,674	+				+2.6
5,641,675	-				-1.0
5,641,675	-				+0.5
5,641,675	-				+0.1
5,641,787	+				-1.8
5,641,787	+				-0.7
5,641,787	+				+1.1
5,641,788	-				+0.2
5,641,788	-				-1.4
5,641,792	+				+0.4
5,641,792	+				+0.3
5,641,793	-				-0.8
5,641,793	-				+0.3
5,641,793	-				+0.0
5,641,793	-				-1.7
5,641,905	+				-0.0
5,641,905	+				-1.4
5,642,398	-		PP_4952	0.41	+1.2