Strain Fitness in Pseudomonas putida KT2440 around PP_4938

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,618,363	-		PP_4936	0.75	-1.3
5,618,363	-		PP_4936	0.75	-1.0
5,618,363	-		PP_4936	0.75	-0.9
5,618,514	+		PP_4936	0.88	-0.5
5,618,515	-		PP_4936	0.88	-2.0
5,618,616	+				-2.6
5,618,617	-				-0.0
5,618,644	+				-1.8
5,618,645	-				+1.3
5,618,690	+				-1.4
5,618,690	+				-0.2
5,618,690	+				-0.7
5,618,691	-				-0.6
5,618,691	-				+0.1
5,618,698	+				-2.7
5,618,710	+				-0.0
5,618,711	-				-0.9
5,618,711	-				-1.3
5,618,747	+				-2.7
5,618,748	-				-0.6
5,618,748	-				+0.5
5,618,843	-		PP_4937	0.15	+0.8
5,618,909	+		PP_4937	0.26	-0.6
5,618,910	-		PP_4937	0.26	-0.4
5,618,917	+		PP_4937	0.27	-0.5
5,619,028	+		PP_4937	0.46	-0.8
5,619,028	+		PP_4937	0.46	+1.4
5,619,029	-		PP_4937	0.46	+0.5
5,619,094	+		PP_4937	0.56	-0.2
5,619,095	-		PP_4937	0.57	+0.2
5,619,095	-		PP_4937	0.57	-0.8
5,619,286	+		PP_4937	0.88	-0.2
5,619,287	-		PP_4937	0.88	-0.3
5,619,287	-		PP_4937	0.88	+0.4
5,619,287	-		PP_4937	0.88	-1.2
5,619,469	-				-0.7
5,619,469	-				-0.9
5,619,519	-		PP_4938	0.14	-2.7
5,619,577	+		PP_4938	0.19	-2.6
5,619,634	+				+0.4
5,619,635	-		PP_4938	0.24	-2.0
5,619,640	+		PP_4938	0.24	-1.6
5,619,641	-		PP_4938	0.25	-1.9
5,619,660	-		PP_4938	0.26	-1.3
5,619,660	-		PP_4938	0.26	+0.1
5,619,726	+		PP_4938	0.32	-2.5
5,619,844	+		PP_4938	0.42	+0.2
5,619,844	+		PP_4938	0.42	-1.5
5,619,845	-		PP_4938	0.42	+1.6
5,619,845	-		PP_4938	0.42	-1.7
5,620,120	+		PP_4938	0.67	-1.9
5,620,120	+		PP_4938	0.67	-1.3
5,620,121	-		PP_4938	0.67	-1.9
5,620,121	-		PP_4938	0.67	-1.3
5,620,170	+		PP_4938	0.71	-0.2
5,620,170	+		PP_4938	0.71	-1.2
5,620,287	+		PP_4938	0.81	+0.1
5,620,287	+		PP_4938	0.81	-1.9
5,620,287	+		PP_4938	0.81	+0.4
5,620,287	+		PP_4938	0.81	-1.1
5,620,287	+		PP_4938	0.81	-2.1
5,620,287	+		PP_4938	0.81	-2.4
5,620,287	+		PP_4938	0.81	-1.2
5,620,287	+		PP_4938	0.81	-1.6
5,620,288	-		PP_4938	0.81	-2.4
5,620,288	-		PP_4938	0.81	-2.0
5,620,288	-		PP_4938	0.81	-1.9
5,620,288	-		PP_4938	0.81	-1.7
5,620,288	-		PP_4938	0.81	-1.1
5,620,288	-		PP_4938	0.81	-2.4
5,620,288	-		PP_4938	0.81	-1.4
5,620,288	-		PP_4938	0.81	-2.8
5,620,413	-				+1.2
5,620,413	-				-2.3
5,620,437	+				-1.4
5,620,437	+				-1.7
5,620,437	+				-1.7
5,620,438	-				-1.6
5,620,438	-				-2.2
5,620,438	-				-2.5
5,620,585	+		PP_4939	0.12	-2.4
5,620,585	+		PP_4939	0.12	-0.5
5,620,637	+		PP_4939	0.19	-0.8
5,620,637	+		PP_4939	0.19	+1.4
5,620,637	+		PP_4939	0.19	+0.5
5,620,674	-		PP_4939	0.24	+0.0
5,620,740	+		PP_4939	0.32	+0.8
5,620,857	+		PP_4939	0.47	-1.2
5,620,857	+		PP_4939	0.47	-1.9
5,620,857	+		PP_4939	0.47	-0.6
5,620,857	+		PP_4939	0.47	-0.1
5,620,967	+		PP_4939	0.62	-0.9
5,620,999	-		PP_4939	0.66	-1.0
5,620,999	-		PP_4939	0.66	+0.6
5,621,019	+		PP_4939	0.68	-1.6
5,621,020	-		PP_4939	0.68	+1.6
5,621,020	-		PP_4939	0.68	-0.9
5,621,145	-		PP_4939	0.85	+0.7
5,621,145	-		PP_4939	0.85	+1.5
5,621,281	-				+1.6
5,621,330	+				+1.2
5,621,331	-				+0.2
5,621,416	-				+3.0
5,621,416	-				-1.5
5,621,416	-				-1.2