Strain Fitness in Pseudomonas putida KT2440 around PP_4837

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,501,556	+				-0.7
5,501,560	+				-0.2
5,501,560	+				-1.1
5,501,560	+				+0.8
5,501,560	+				+0.4
5,501,561	-				-2.0
5,501,561	-				+1.6
5,501,563	-				-0.3
5,501,563	-				-0.5
5,501,572	+				-0.2
5,501,573	-				+2.0
5,501,578	-				-1.3
5,501,578	-				-1.8
5,501,578	-				-0.2
5,501,935	+		PP_4835	0.84	-0.2
5,501,936	-		PP_4835	0.84	+0.7
5,501,936	-		PP_4835	0.84	-2.0
5,501,969	+				-0.3
5,501,991	-				-1.1
5,502,111	+		PP_4836	0.14	-1.9
5,502,112	-		PP_4836	0.14	+0.7
5,502,186	+		PP_4836	0.29	+0.4
5,502,193	-		PP_4836	0.30	-1.1
5,502,366	+		PP_4836	0.66	-1.9
5,502,367	-		PP_4836	0.66	-0.6
5,502,478	+		PP_4836	0.89	+1.0
5,502,531	+				+0.2
5,502,531	+				+2.0
5,502,532	-				+1.0
5,502,583	-				-0.4
5,502,665	+		PP_4837	0.26	+1.6
5,502,935	+		PP_4837	0.88	+1.1
5,502,935	+		PP_4837	0.88	+0.3
5,502,936	-		PP_4837	0.89	+0.7
5,502,936	-		PP_4837	0.89	-0.4
5,503,050	+				+0.3
5,503,051	-				-0.2
5,503,444	+		PP_4838	0.19	+0.3
5,503,444	+		PP_4838	0.19	-1.8
5,503,444	+		PP_4838	0.19	-0.3
5,503,444	+		PP_4838	0.19	+3.0
5,503,444	+		PP_4838	0.19	+1.4
5,503,445	-		PP_4838	0.19	+1.0
5,503,445	-		PP_4838	0.19	-1.3
5,503,445	-		PP_4838	0.19	-1.4
5,503,445	-		PP_4838	0.19	-0.5
5,503,445	-		PP_4838	0.19	-1.9
5,503,447	-		PP_4838	0.19	-1.2
5,503,447	-		PP_4838	0.19	+1.9
5,503,463	-		PP_4838	0.20	+0.2
5,503,463	-		PP_4838	0.20	+1.2
5,503,463	-		PP_4838	0.20	-0.8
5,503,657	+		PP_4838	0.29	-2.0
5,503,657	+		PP_4838	0.29	+0.6
5,503,936	+		PP_4838	0.43	+1.9
5,503,936	+		PP_4838	0.43	-0.2
5,503,937	-		PP_4838	0.43	-1.7
5,503,939	+		PP_4838	0.43	+0.1
5,503,939	+		PP_4838	0.43	+0.9
5,503,939	+		PP_4838	0.43	-0.9
5,503,939	+		PP_4838	0.43	+1.1
5,503,939	+		PP_4838	0.43	+1.4
5,503,940	-		PP_4838	0.43	-0.5
5,503,940	-		PP_4838	0.43	+1.9
5,503,945	+		PP_4838	0.43	+0.9
5,503,945	+		PP_4838	0.43	+0.6
5,503,946	-		PP_4838	0.43	+0.5
5,503,946	-		PP_4838	0.43	-0.1
5,503,969	+		PP_4838	0.44	-0.5
5,503,969	+		PP_4838	0.44	-0.0
5,503,969	+		PP_4838	0.44	-0.8
5,503,969	+		PP_4838	0.44	+2.2
5,503,969	+		PP_4838	0.44	+0.7
5,503,970	-		PP_4838	0.44	+0.5
5,503,970	-		PP_4838	0.44	-1.5
5,503,970	-		PP_4838	0.44	-1.1
5,503,970	-		PP_4838	0.44	+2.0