Strain Fitness in Pseudomonas putida KT2440 around PP_4804

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,466,034	+				+1.1
5,466,034	+		PP_4803	0.49	-1.2
5,466,035	-		PP_4803	0.49	-0.6
5,466,043	+		PP_4803	0.50	+1.7
5,466,043	+		PP_4803	0.50	+0.3
5,466,043	+		PP_4803	0.50	-0.2
5,466,107	-		PP_4803	0.55	+0.1
5,466,291	+		PP_4803	0.71	-0.0
5,466,407	+		PP_4803	0.81	+1.5
5,466,408	-		PP_4803	0.81	+0.2
5,466,408	-		PP_4803	0.81	-0.7
5,466,408	-		PP_4803	0.81	+1.2
5,466,409	+		PP_4803	0.81	-0.8
5,466,409	+		PP_4803	0.81	+1.4
5,466,501	+		PP_4803	0.89	-0.3
5,466,501	+		PP_4803	0.89	-0.8
5,466,501	+		PP_4803	0.89	-0.0
5,466,501	+		PP_4803	0.89	+1.1
5,466,501	+		PP_4803	0.89	-1.5
5,466,501	+		PP_4803	0.89	+0.6
5,466,502	-		PP_4803	0.89	+0.4
5,466,502	-		PP_4803	0.89	-1.1
5,466,502	-		PP_4803	0.89	-1.9
5,466,502	-		PP_4803	0.89	+1.1
5,466,505	+		PP_4803	0.90	-0.5
5,466,505	+		PP_4803	0.90	-1.5
5,466,506	-		PP_4803	0.90	+0.8
5,466,582	+				-0.7
5,466,582	+				+0.4
5,466,582	+				+0.8
5,466,582	+				+0.9
5,466,696	-				-0.4
5,466,736	+				-0.1
5,466,765	+				+0.2
5,466,765	+				+1.4
5,466,765	+				+0.2
5,466,765	+				-1.8
5,466,765	+				-1.0
5,466,765	+				+0.9
5,466,766	-				+0.4
5,466,766	-				-0.4
5,466,766	-				+0.5
5,466,766	-				+0.3
5,466,766	-				-0.6
5,466,766	-				-0.4
5,466,966	+		PP_4804	0.12	+0.0
5,466,967	-		PP_4804	0.12	+1.0
5,467,061	-		PP_4804	0.22	-1.4
5,467,108	+		PP_4804	0.26	-0.7
5,467,109	-		PP_4804	0.26	-1.1
5,467,431	-		PP_4804	0.59	-0.5
5,467,581	-		PP_4804	0.74	+0.6
5,467,601	+		PP_4804	0.76	+1.2
5,467,620	+		PP_4804	0.77	-0.5
5,467,846	+				+0.3
5,467,846	+				-0.8
5,467,847	-				-0.2
5,467,891	-				+0.6
5,467,904	-				-0.1
5,467,904	-				+0.5
5,467,922	-				-2.2
5,467,937	-				-0.4
5,467,937	-				+0.1
5,467,937	-				-1.2
5,467,961	-		PP_4805	0.11	-0.5
5,468,046	-		PP_4805	0.19	+0.8
5,468,170	+		PP_4805	0.31	+2.4
5,468,171	-		PP_4805	0.31	-0.0
5,468,171	-		PP_4805	0.31	+1.1
5,468,213	+		PP_4805	0.35	-0.9
5,468,213	+		PP_4805	0.35	-1.0
5,468,219	+		PP_4805	0.36	-0.0
5,468,219	+		PP_4805	0.36	-0.5
5,468,219	+		PP_4805	0.36	+1.2
5,468,219	+		PP_4805	0.36	+1.1
5,468,220	-		PP_4805	0.36	+0.4
5,468,249	-		PP_4805	0.39	-0.9
5,468,249	-		PP_4805	0.39	-0.2
5,468,249	-		PP_4805	0.39	+0.5
5,468,434	+		PP_4805	0.56	-1.2
5,468,434	+		PP_4805	0.56	+0.7
5,468,444	+		PP_4805	0.57	-0.3
5,468,488	+		PP_4805	0.61	+1.1
5,468,488	+		PP_4805	0.61	+1.4
5,468,489	-		PP_4805	0.62	-1.2
5,468,489	-		PP_4805	0.62	-0.9
5,468,500	-		PP_4805	0.63	+0.2
5,468,507	-		PP_4805	0.63	+0.4
5,468,529	+		PP_4805	0.65	-0.8
5,468,529	+		PP_4805	0.65	+0.2
5,468,529	+		PP_4805	0.65	+1.2
5,468,599	+		PP_4805	0.72	+0.5
5,468,711	-		PP_4805	0.83	-0.6
5,468,761	+		PP_4805	0.87	-0.3
5,468,785	-		PP_4805	0.90	+0.6