Strain Fitness in Pseudomonas putida KT2440 around PP_4616

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4615 and PP_5701 are separated by 87 nucleotidesPP_5701 and PP_4616 are separated by 280 nucleotidesPP_4616 and PP_4617 are separated by 58 nucleotides PP_4615: PP_4615 - conserved membrane protein of unknown function, at 5,237,931 to 5,238,401 _4615 PP_5701: PP_5701 - conserved protein of unknown function, at 5,238,489 to 5,238,692 _5701 PP_4616: PP_4616 - conserved protein of unknown function, at 5,238,973 to 5,239,236 _4616 PP_4617: PP_4617 - leucine dehydrogenase, at 5,239,295 to 5,240,314 _4617 Position (kb) 5238 5239 5240Strain fitness (log2 ratio) -2 -1 0 1 2at 5237.992 kb on + strand, within PP_4615at 5238.001 kb on + strand, within PP_4615at 5238.001 kb on + strand, within PP_4615at 5238.052 kb on + strand, within PP_4615at 5238.052 kb on + strand, within PP_4615at 5238.130 kb on + strand, within PP_4615at 5238.130 kb on + strand, within PP_4615at 5238.130 kb on + strand, within PP_4615at 5238.130 kb on + strand, within PP_4615at 5238.131 kb on - strand, within PP_4615at 5238.169 kb on + strand, within PP_4615at 5238.170 kb on - strand, within PP_4615at 5238.170 kb on - strand, within PP_4615at 5238.170 kb on - strand, within PP_4615at 5238.170 kb on - strand, within PP_4615at 5238.199 kb on + strand, within PP_4615at 5238.199 kb on + strand, within PP_4615at 5238.200 kb on - strand, within PP_4615at 5238.314 kb on - strand, within PP_4615at 5238.314 kb on - strand, within PP_4615at 5238.419 kb on + strandat 5238.427 kb on + strandat 5238.427 kb on + strandat 5238.469 kb on + strandat 5238.619 kb on + strand, within PP_5701at 5238.620 kb on - strand, within PP_5701at 5238.620 kb on - strand, within PP_5701at 5238.691 kb on - strandat 5238.691 kb on - strandat 5238.708 kb on + strandat 5238.709 kb on - strandat 5238.709 kb on - strandat 5238.709 kb on - strandat 5238.709 kb on - strandat 5238.709 kb on - strandat 5238.758 kb on - strandat 5238.813 kb on + strandat 5238.814 kb on - strandat 5238.814 kb on - strandat 5238.814 kb on - strandat 5238.923 kb on + strandat 5238.961 kb on + strandat 5238.961 kb on + strandat 5238.961 kb on + strandat 5238.962 kb on - strandat 5238.962 kb on - strandat 5238.992 kb on - strandat 5238.992 kb on - strandat 5239.029 kb on + strand, within PP_4616at 5239.144 kb on + strand, within PP_4616at 5239.144 kb on + strand, within PP_4616at 5239.144 kb on + strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.238 kb on - strandat 5239.259 kb on + strandat 5239.260 kb on - strandat 5239.302 kb on + strandat 5239.302 kb on + strandat 5239.303 kb on - strandat 5239.414 kb on + strand, within PP_4617at 5239.414 kb on + strand, within PP_4617at 5239.415 kb on - strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.482 kb on + strand, within PP_4617at 5239.483 kb on - strand, within PP_4617at 5239.483 kb on - strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.500 kb on - strand, within PP_4617at 5239.500 kb on - strand, within PP_4617at 5239.500 kb on - strand, within PP_4617at 5239.530 kb on + strand, within PP_4617at 5239.637 kb on - strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.860 kb on - strand, within PP_4617at 5239.926 kb on + strand, within PP_4617at 5239.926 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.122 kb on - strand, within PP_4617at 5240.122 kb on - strand, within PP_4617at 5240.122 kb on - strand, within PP_4617

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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5,237,992 + PP_4615 0.13 -0.4
5,238,001 + PP_4615 0.15 -0.5
5,238,001 + PP_4615 0.15 -0.9
5,238,052 + PP_4615 0.26 -0.3
5,238,052 + PP_4615 0.26 +0.3
5,238,130 + PP_4615 0.42 -0.5
5,238,130 + PP_4615 0.42 +1.0
5,238,130 + PP_4615 0.42 -2.3
5,238,130 + PP_4615 0.42 -0.4
5,238,131 - PP_4615 0.42 +0.1
5,238,169 + PP_4615 0.51 +1.9
5,238,170 - PP_4615 0.51 -1.9
5,238,170 - PP_4615 0.51 +1.2
5,238,170 - PP_4615 0.51 +0.3
5,238,170 - PP_4615 0.51 -0.6
5,238,199 + PP_4615 0.57 -0.3
5,238,199 + PP_4615 0.57 -1.3
5,238,200 - PP_4615 0.57 +0.6
5,238,314 - PP_4615 0.81 +0.7
5,238,314 - PP_4615 0.81 -0.2
5,238,419 + +1.3
5,238,427 + -1.3
5,238,427 + -2.5
5,238,469 + -0.2
5,238,619 + PP_5701 0.64 +0.1
5,238,620 - PP_5701 0.64 -1.8
5,238,620 - PP_5701 0.64 -1.7
5,238,691 - -0.2
5,238,691 - -0.3
5,238,708 + +0.9
5,238,709 - +0.4
5,238,709 - -1.1
5,238,709 - -0.9
5,238,709 - -0.3
5,238,709 - +0.0
5,238,758 - -1.1
5,238,813 + -1.0
5,238,814 - +0.6
5,238,814 - +0.1
5,238,814 - +0.4
5,238,923 + -1.1
5,238,961 + +1.0
5,238,961 + -0.4
5,238,961 + -1.6
5,238,962 - -1.2
5,238,962 - +1.0
5,238,992 - +0.2
5,238,992 - -1.6
5,239,029 + PP_4616 0.21 -0.2
5,239,144 + PP_4616 0.65 -1.4
5,239,144 + PP_4616 0.65 +0.4
5,239,144 + PP_4616 0.65 -0.1
5,239,145 - PP_4616 0.65 +1.1
5,239,145 - PP_4616 0.65 -0.3
5,239,145 - PP_4616 0.65 +0.3
5,239,145 - PP_4616 0.65 -2.0
5,239,145 - PP_4616 0.65 -1.8
5,239,238 - +1.1
5,239,259 + -0.7
5,239,260 - -0.6
5,239,302 + -0.7
5,239,302 + +2.6
5,239,303 - -0.8
5,239,414 + PP_4617 0.12 +0.9
5,239,414 + PP_4617 0.12 +0.9
5,239,415 - PP_4617 0.12 -1.2
5,239,455 + PP_4617 0.16 +1.4
5,239,455 + PP_4617 0.16 -1.0
5,239,455 + PP_4617 0.16 +0.3
5,239,455 + PP_4617 0.16 -2.0
5,239,455 + PP_4617 0.16 +0.6
5,239,456 - PP_4617 0.16 -0.6
5,239,456 - PP_4617 0.16 -1.5
5,239,456 - PP_4617 0.16 -0.7
5,239,456 - PP_4617 0.16 -0.2
5,239,456 - PP_4617 0.16 -2.6
5,239,482 + PP_4617 0.18 -0.8
5,239,483 - PP_4617 0.18 +0.2
5,239,483 - PP_4617 0.18 +0.8
5,239,494 + PP_4617 0.20 +0.3
5,239,494 + PP_4617 0.20 +0.1
5,239,494 + PP_4617 0.20 -1.2
5,239,494 + PP_4617 0.20 -1.7
5,239,494 + PP_4617 0.20 -0.5
5,239,494 + PP_4617 0.20 -1.1
5,239,494 + PP_4617 0.20 +0.7
5,239,494 + PP_4617 0.20 -0.5
5,239,494 + PP_4617 0.20 +1.4
5,239,494 + PP_4617 0.20 -1.8
5,239,495 - PP_4617 0.20 -1.6
5,239,495 - PP_4617 0.20 -1.2
5,239,495 - PP_4617 0.20 +1.0
5,239,495 - PP_4617 0.20 -0.6
5,239,495 - PP_4617 0.20 +0.3
5,239,495 - PP_4617 0.20 +1.3
5,239,499 + PP_4617 0.20 -0.2
5,239,499 + PP_4617 0.20 -1.1
5,239,499 + PP_4617 0.20 +1.2
5,239,499 + PP_4617 0.20 -1.1
5,239,499 + PP_4617 0.20 +0.0
5,239,500 - PP_4617 0.20 -0.3
5,239,500 - PP_4617 0.20 -0.9
5,239,500 - PP_4617 0.20 -1.3
5,239,530 + PP_4617 0.23 -1.1
5,239,637 - PP_4617 0.34 +1.1
5,239,859 + PP_4617 0.55 -0.3
5,239,859 + PP_4617 0.55 -0.0
5,239,859 + PP_4617 0.55 +1.2
5,239,859 + PP_4617 0.55 +0.9
5,239,860 - PP_4617 0.55 +1.7
5,239,926 + PP_4617 0.62 +0.7
5,239,926 + PP_4617 0.62 +0.2
5,240,121 + PP_4617 0.81 +0.8
5,240,121 + PP_4617 0.81 -0.8
5,240,121 + PP_4617 0.81 -0.4
5,240,121 + PP_4617 0.81 -1.5
5,240,121 + PP_4617 0.81 +1.1
5,240,121 + PP_4617 0.81 -1.2
5,240,121 + PP_4617 0.81 -1.2
5,240,122 - PP_4617 0.81 -0.3
5,240,122 - PP_4617 0.81 +0.8
5,240,122 - PP_4617 0.81 -0.6

Or see this region's nucleotide sequence