Strain Fitness in Pseudomonas putida KT2440 around PP_4609

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,229,844	+		PP_4607	0.62	+0.0
5,229,845	-		PP_4607	0.62	-1.7
5,229,845	-		PP_4607	0.62	-0.8
5,230,072	+		PP_4607	0.85	+1.6
5,230,294	+		PP_4608	0.14	-2.0
5,230,295	-		PP_4608	0.15	-0.6
5,230,295	-		PP_4608	0.15	-0.3
5,230,295	-		PP_4608	0.15	+1.5
5,230,295	-		PP_4608	0.15	-1.4
5,230,295	-		PP_4608	0.15	-0.7
5,230,347	+		PP_4608	0.24	-1.6
5,230,348	-				+0.9
5,230,423	+		PP_4608	0.37	-0.9
5,230,522	+		PP_4608	0.54	-0.0
5,230,544	+		PP_4608	0.58	-0.5
5,230,544	+		PP_4608	0.58	-0.7
5,230,544	+		PP_4608	0.58	+0.9
5,230,545	-		PP_4608	0.58	+1.6
5,230,545	-		PP_4608	0.58	+1.0
5,230,575	+		PP_4608	0.63	+1.2
5,230,575	+		PP_4608	0.63	+1.1
5,230,575	+		PP_4608	0.63	+0.4
5,230,576	-				+0.8
5,230,679	+		PP_4608	0.81	-1.4
5,230,680	-		PP_4608	0.81	+2.0
5,230,976	-		PP_4609	0.56	-0.1
5,231,083	+		PP_4609	0.89	-0.4
5,231,083	+		PP_4609	0.89	-0.4
5,231,083	+				+0.2
5,231,083	+		PP_4609	0.89	-1.7
5,231,083	+		PP_4609	0.89	+0.5
5,231,084	-		PP_4609	0.89	-1.5
5,231,084	-		PP_4609	0.89	-0.5
5,231,084	-		PP_4609	0.89	-1.7
5,231,084	-		PP_4609	0.89	-1.2
5,231,179	-				-0.4
5,231,283	+		PP_4610	0.10	+0.5
5,231,391	-		PP_4610	0.17	+0.6
5,231,540	+		PP_4610	0.27	-0.9
5,231,540	+		PP_4610	0.27	-0.3
5,231,576	+		PP_4610	0.29	-0.0
5,231,576	+		PP_4610	0.29	-0.5
5,231,576	+		PP_4610	0.29	+1.7
5,231,576	+		PP_4610	0.29	-2.4
5,231,577	-		PP_4610	0.29	+0.2
5,231,577	-		PP_4610	0.29	+1.2
5,231,577	-		PP_4610	0.29	+0.0
5,231,671	+		PP_4610	0.35	-0.3
5,231,671	+		PP_4610	0.35	-0.6
5,231,671	+		PP_4610	0.35	+0.4
5,231,672	-		PP_4610	0.35	-1.4
5,231,672	-		PP_4610	0.35	-0.6
5,231,672	-		PP_4610	0.35	+0.9
5,231,743	-		PP_4610	0.40	+0.2
5,231,936	-		PP_4610	0.52	-2.1
5,232,017	-		PP_4610	0.57	-2.4
5,232,017	-		PP_4610	0.57	+0.1
5,232,017	-		PP_4610	0.57	-0.2
5,232,037	+		PP_4610	0.58	-0.4
5,232,038	-		PP_4610	0.58	+0.9
5,232,070	+		PP_4610	0.60	+0.1
5,232,070	+		PP_4610	0.60	-0.1
5,232,071	-		PP_4610	0.60	-0.4
5,232,071	-		PP_4610	0.60	-0.3
5,232,071	-		PP_4610	0.60	+1.3
5,232,071	-		PP_4610	0.60	+0.2
5,232,094	+		PP_4610	0.62	-0.7
5,232,094	+		PP_4610	0.62	-0.4
5,232,095	-		PP_4610	0.62	+0.2
5,232,095	-		PP_4610	0.62	+2.3