Strain Fitness in Pseudomonas putida KT2440 around PP_4606

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4605 and PP_4606 are separated by 29 nucleotidesPP_4606 and PP_4607 are separated by 175 nucleotides PP_4605: PP_4605 - Transcriptional regulator, AraC family, at 5,225,763 to 5,226,638 _4605 PP_4606: PP_4606 - putative Outer membrane ferric siderophore receptor, at 5,226,668 to 5,229,058 _4606 PP_4607: PP_4607 - putative Transmembrane sensor, at 5,229,234 to 5,230,214 _4607 Position (kb) 5226 5227 5228 5229 5230Strain fitness (log2 ratio) -2 -1 0 1 2at 5225.736 kb on + strandat 5225.895 kb on + strand, within PP_4605at 5225.907 kb on - strand, within PP_4605at 5225.928 kb on + strand, within PP_4605at 5225.928 kb on + strand, within PP_4605at 5225.929 kb on - strand, within PP_4605at 5226.063 kb on + strand, within PP_4605at 5226.063 kb on + strand, within PP_4605at 5226.063 kb on + strand, within PP_4605at 5226.063 kb on + strand, within PP_4605at 5226.063 kb on + strand, within PP_4605at 5226.063 kb on + strand, within PP_4605at 5226.063 kb on + strand, within PP_4605at 5226.064 kb on - strand, within PP_4605at 5226.064 kb on - strand, within PP_4605at 5226.064 kb on - strand, within PP_4605at 5226.064 kb on - strand, within PP_4605at 5226.064 kb on - strand, within PP_4605at 5226.064 kb on - strand, within PP_4605at 5226.064 kb on - strand, within PP_4605at 5226.064 kb on - strand, within PP_4605at 5226.097 kb on + strand, within PP_4605at 5226.097 kb on + strand, within PP_4605at 5226.097 kb on + strand, within PP_4605at 5226.098 kb on - strand, within PP_4605at 5226.346 kb on - strand, within PP_4605at 5226.466 kb on - strand, within PP_4605at 5226.466 kb on - strand, within PP_4605at 5226.518 kb on - strand, within PP_4605at 5226.518 kb on - strand, within PP_4605at 5226.541 kb on + strand, within PP_4605at 5226.542 kb on - strand, within PP_4605at 5226.616 kb on - strandat 5226.669 kb on + strandat 5226.726 kb on + strandat 5226.726 kb on + strandat 5226.747 kb on + strandat 5226.747 kb on + strandat 5226.747 kb on + strandat 5226.747 kb on + strandat 5226.747 kb on + strandat 5226.748 kb on - strandat 5226.748 kb on - strandat 5226.750 kb on + strandat 5226.750 kb on + strandat 5226.750 kb on + strandat 5226.750 kb on + strandat 5226.750 kb on + strandat 5226.751 kb on - strandat 5226.751 kb on - strandat 5226.751 kb on - strandat 5226.751 kb on - strandat 5226.751 kb on - strandat 5226.751 kb on - strandat 5226.751 kb on - strandat 5226.819 kb on + strandat 5226.844 kb on + strandat 5226.845 kb on - strandat 5226.846 kb on + strandat 5226.846 kb on + strandat 5226.847 kb on - strandat 5226.847 kb on - strandat 5226.847 kb on - strandat 5226.865 kb on + strandat 5226.866 kb on - strandat 5226.866 kb on - strandat 5226.954 kb on + strand, within PP_4606at 5227.050 kb on + strand, within PP_4606at 5227.050 kb on + strand, within PP_4606at 5227.051 kb on - strand, within PP_4606at 5227.051 kb on - strand, within PP_4606at 5227.178 kb on + strand, within PP_4606at 5227.178 kb on + strand, within PP_4606at 5227.179 kb on - strand, within PP_4606at 5227.179 kb on - strand, within PP_4606at 5227.179 kb on - strand, within PP_4606at 5227.195 kb on + strand, within PP_4606at 5227.359 kb on + strand, within PP_4606at 5227.359 kb on + strand, within PP_4606at 5227.359 kb on + strand, within PP_4606at 5227.359 kb on + strand, within PP_4606at 5227.360 kb on - strand, within PP_4606at 5227.360 kb on - strand, within PP_4606at 5227.360 kb on - strand, within PP_4606at 5227.360 kb on - strand, within PP_4606at 5227.360 kb on - strand, within PP_4606at 5227.387 kb on - strand, within PP_4606at 5227.464 kb on + strand, within PP_4606at 5227.465 kb on - strand, within PP_4606at 5227.465 kb on - strand, within PP_4606at 5227.473 kb on + strand, within PP_4606at 5227.496 kb on + strand, within PP_4606at 5227.496 kb on + strand, within PP_4606at 5227.497 kb on - strand, within PP_4606at 5227.497 kb on - strand, within PP_4606at 5227.618 kb on - strand, within PP_4606at 5227.866 kb on + strand, within PP_4606at 5227.866 kb on + strand, within PP_4606at 5227.866 kb on + strand, within PP_4606at 5227.866 kb on + strand, within PP_4606at 5227.867 kb on - strand, within PP_4606at 5227.867 kb on - strand, within PP_4606at 5227.888 kb on - strand, within PP_4606at 5228.074 kb on - strand, within PP_4606at 5228.148 kb on + strand, within PP_4606at 5228.148 kb on + strand, within PP_4606at 5228.149 kb on - strand, within PP_4606at 5228.153 kb on - strand, within PP_4606at 5228.161 kb on - strand, within PP_4606at 5228.161 kb on - strand, within PP_4606at 5228.265 kb on + strand, within PP_4606at 5228.266 kb on - strand, within PP_4606at 5228.266 kb on - strand, within PP_4606at 5228.295 kb on + strand, within PP_4606at 5228.295 kb on + strand, within PP_4606at 5228.295 kb on + strand, within PP_4606at 5228.295 kb on + strand, within PP_4606at 5228.295 kb on + strand, within PP_4606at 5228.296 kb on - strand, within PP_4606at 5228.296 kb on - strand, within PP_4606at 5228.296 kb on - strand, within PP_4606at 5228.296 kb on - strand, within PP_4606at 5228.359 kb on - strand, within PP_4606at 5228.673 kb on + strand, within PP_4606at 5228.674 kb on - strand, within PP_4606at 5228.680 kb on - strand, within PP_4606at 5228.680 kb on - strand, within PP_4606at 5228.680 kb on - strand, within PP_4606at 5228.758 kb on + strand, within PP_4606at 5228.759 kb on - strand, within PP_4606at 5228.877 kb on + strandat 5228.878 kb on - strandat 5228.899 kb on + strandat 5228.955 kb on + strandat 5228.955 kb on + strandat 5228.956 kb on - strandat 5229.114 kb on - strandat 5229.135 kb on - strandat 5229.196 kb on + strandat 5229.207 kb on + strandat 5229.235 kb on + strandat 5229.381 kb on - strand, within PP_4607at 5229.395 kb on - strand, within PP_4607at 5229.437 kb on - strand, within PP_4607at 5229.439 kb on + strand, within PP_4607at 5229.439 kb on + strand, within PP_4607at 5229.439 kb on + strand, within PP_4607at 5229.439 kb on + strand, within PP_4607at 5229.440 kb on - strand, within PP_4607at 5229.506 kb on + strand, within PP_4607at 5229.518 kb on - strand, within PP_4607at 5229.518 kb on - strand, within PP_4607at 5229.518 kb on - strand, within PP_4607at 5229.844 kb on + strand, within PP_4607at 5229.845 kb on - strand, within PP_4607at 5229.845 kb on - strand, within PP_4607

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
remove
5,225,736 + +0.0
5,225,895 + PP_4605 0.15 -0.3
5,225,907 - PP_4605 0.16 -1.6
5,225,928 + PP_4605 0.19 -0.3
5,225,928 + PP_4605 0.19 +1.2
5,225,929 - PP_4605 0.19 -2.3
5,226,063 + PP_4605 0.34 -0.1
5,226,063 + PP_4605 0.34 +0.4
5,226,063 + PP_4605 0.34 -0.0
5,226,063 + PP_4605 0.34 -0.5
5,226,063 + PP_4605 0.34 -2.5
5,226,063 + PP_4605 0.34 +0.8
5,226,063 + PP_4605 0.34 -1.2
5,226,064 - PP_4605 0.34 +0.2
5,226,064 - PP_4605 0.34 +2.0
5,226,064 - PP_4605 0.34 +1.5
5,226,064 - PP_4605 0.34 -0.5
5,226,064 - PP_4605 0.34 +0.1
5,226,064 - PP_4605 0.34 -1.1
5,226,064 - PP_4605 0.34 +0.1
5,226,064 - PP_4605 0.34 -0.3
5,226,097 + PP_4605 0.38 -0.6
5,226,097 + PP_4605 0.38 -0.9
5,226,097 + PP_4605 0.38 -0.3
5,226,098 - PP_4605 0.38 +0.8
5,226,346 - PP_4605 0.67 -0.4
5,226,466 - PP_4605 0.80 -0.4
5,226,466 - PP_4605 0.80 -1.2
5,226,518 - PP_4605 0.86 -0.6
5,226,518 - PP_4605 0.86 +0.0
5,226,541 + PP_4605 0.89 -0.5
5,226,542 - PP_4605 0.89 +0.2
5,226,616 - +0.4
5,226,669 + -0.4
5,226,726 + -0.3
5,226,726 + -0.3
5,226,747 + +0.6
5,226,747 + +1.5
5,226,747 + -0.8
5,226,747 + -0.8
5,226,747 + -0.6
5,226,748 - -2.4
5,226,748 - -2.5
5,226,750 + -1.9
5,226,750 + +0.7
5,226,750 + +0.3
5,226,750 + -1.6
5,226,750 + -0.6
5,226,751 - +0.5
5,226,751 - -2.3
5,226,751 - +0.3
5,226,751 - +1.1
5,226,751 - +2.0
5,226,751 - +0.7
5,226,751 - -0.7
5,226,819 + -0.4
5,226,844 + +0.8
5,226,845 - +1.4
5,226,846 + +1.1
5,226,846 + +0.2
5,226,847 - +1.5
5,226,847 - -0.8
5,226,847 - +0.0
5,226,865 + -1.6
5,226,866 - -0.4
5,226,866 - -1.9
5,226,954 + PP_4606 0.12 +2.2
5,227,050 + PP_4606 0.16 +0.2
5,227,050 + PP_4606 0.16 +0.6
5,227,051 - PP_4606 0.16 +0.8
5,227,051 - PP_4606 0.16 +0.9
5,227,178 + PP_4606 0.21 +0.5
5,227,178 + PP_4606 0.21 +0.7
5,227,179 - PP_4606 0.21 +0.4
5,227,179 - PP_4606 0.21 +0.8
5,227,179 - PP_4606 0.21 +2.2
5,227,195 + PP_4606 0.22 +0.3
5,227,359 + PP_4606 0.29 +1.0
5,227,359 + PP_4606 0.29 +0.6
5,227,359 + PP_4606 0.29 +0.1
5,227,359 + PP_4606 0.29 +1.2
5,227,360 - PP_4606 0.29 +1.1
5,227,360 - PP_4606 0.29 +0.1
5,227,360 - PP_4606 0.29 -1.4
5,227,360 - PP_4606 0.29 +0.1
5,227,360 - PP_4606 0.29 +0.3
5,227,387 - PP_4606 0.30 +0.6
5,227,464 + PP_4606 0.33 -0.3
5,227,465 - PP_4606 0.33 -0.7
5,227,465 - PP_4606 0.33 -0.4
5,227,473 + PP_4606 0.34 -2.6
5,227,496 + PP_4606 0.35 +0.3
5,227,496 + PP_4606 0.35 -1.7
5,227,497 - PP_4606 0.35 -0.6
5,227,497 - PP_4606 0.35 -0.1
5,227,618 - PP_4606 0.40 +0.4
5,227,866 + PP_4606 0.50 -2.2
5,227,866 + PP_4606 0.50 -1.9
5,227,866 + PP_4606 0.50 -0.6
5,227,866 + PP_4606 0.50 +0.0
5,227,867 - PP_4606 0.50 -1.9
5,227,867 - PP_4606 0.50 -0.2
5,227,888 - PP_4606 0.51 -1.5
5,228,074 - PP_4606 0.59 +2.1
5,228,148 + PP_4606 0.62 -0.1
5,228,148 + PP_4606 0.62 -0.1
5,228,149 - PP_4606 0.62 +0.4
5,228,153 - PP_4606 0.62 +0.2
5,228,161 - PP_4606 0.62 +2.5
5,228,161 - PP_4606 0.62 +1.2
5,228,265 + PP_4606 0.67 -0.2
5,228,266 - PP_4606 0.67 +2.0
5,228,266 - PP_4606 0.67 +0.4
5,228,295 + PP_4606 0.68 +0.7
5,228,295 + PP_4606 0.68 +0.0
5,228,295 + PP_4606 0.68 -2.7
5,228,295 + PP_4606 0.68 -1.0
5,228,295 + PP_4606 0.68 -2.1
5,228,296 - PP_4606 0.68 -1.1
5,228,296 - PP_4606 0.68 +0.6
5,228,296 - PP_4606 0.68 +0.3
5,228,296 - PP_4606 0.68 -0.6
5,228,359 - PP_4606 0.71 +0.4
5,228,673 + PP_4606 0.84 -0.4
5,228,674 - PP_4606 0.84 -1.7
5,228,680 - PP_4606 0.84 -1.2
5,228,680 - PP_4606 0.84 -0.0
5,228,680 - PP_4606 0.84 +0.4
5,228,758 + PP_4606 0.87 -0.5
5,228,759 - PP_4606 0.87 +0.4
5,228,877 + +0.6
5,228,878 - +0.5
5,228,899 + +1.2
5,228,955 + +0.3
5,228,955 + -0.6
5,228,956 - -0.4
5,229,114 - +0.7
5,229,135 - +0.7
5,229,196 + -0.1
5,229,207 + +0.8
5,229,235 + -1.5
5,229,381 - PP_4607 0.15 +0.5
5,229,395 - PP_4607 0.16 -0.0
5,229,437 - PP_4607 0.21 +0.2
5,229,439 + PP_4607 0.21 -0.4
5,229,439 + PP_4607 0.21 -2.1
5,229,439 + PP_4607 0.21 +0.2
5,229,439 + PP_4607 0.21 +1.2
5,229,440 - PP_4607 0.21 +1.4
5,229,506 + PP_4607 0.28 -0.0
5,229,518 - PP_4607 0.29 -0.2
5,229,518 - PP_4607 0.29 -1.3
5,229,518 - PP_4607 0.29 -1.3
5,229,844 + PP_4607 0.62 +0.0
5,229,845 - PP_4607 0.62 -1.7
5,229,845 - PP_4607 0.62 -0.8

Or see this region's nucleotide sequence