Strain Fitness in Pseudomonas putida KT2440 around PP_4594

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4592 and PP_4593 are separated by 250 nucleotidesPP_4593 and PP_4594 are separated by 93 nucleotidesPP_4594 and PP_4595 are separated by 59 nucleotidesPP_4595 and PP_4596 are separated by 109 nucleotides PP_4592: PP_4592 - putative metal dependent hydrolase, at 5,210,312 to 5,211,949 _4592 PP_4593: PP_4593 - conserved protein of unknown function, at 5,212,200 to 5,212,436 _4593 PP_4594: PP_4594 - putative Cystathionine gamma-synthase, at 5,212,530 to 5,213,711 _4594 PP_4595: PP_4595 - putative LRP-like transcriptional regulator, at 5,213,771 to 5,214,265 _4595 PP_4596: PP_4596 - putative oxidoreductase, at 5,214,375 to 5,216,705 _4596 Position (kb) 5212 5213 5214Strain fitness (log2 ratio) -2 -1 0 1 2at 5211.583 kb on + strand, within PP_4592at 5211.583 kb on + strandat 5211.584 kb on - strand, within PP_4592at 5211.585 kb on + strand, within PP_4592at 5211.585 kb on + strand, within PP_4592at 5211.585 kb on + strand, within PP_4592at 5211.586 kb on - strand, within PP_4592at 5211.586 kb on - strand, within PP_4592at 5211.586 kb on - strand, within PP_4592at 5211.646 kb on + strand, within PP_4592at 5211.667 kb on + strand, within PP_4592at 5211.667 kb on + strand, within PP_4592at 5211.668 kb on - strand, within PP_4592at 5211.668 kb on - strand, within PP_4592at 5211.671 kb on + strand, within PP_4592at 5211.678 kb on + strand, within PP_4592at 5211.693 kb on + strand, within PP_4592at 5211.693 kb on + strand, within PP_4592at 5211.694 kb on - strand, within PP_4592at 5211.727 kb on + strand, within PP_4592at 5211.727 kb on + strand, within PP_4592at 5211.727 kb on + strand, within PP_4592at 5211.728 kb on - strand, within PP_4592at 5211.731 kb on + strand, within PP_4592at 5211.732 kb on - strand, within PP_4592at 5211.732 kb on - strand, within PP_4592at 5211.732 kb on - strand, within PP_4592at 5211.743 kb on + strand, within PP_4592at 5211.743 kb on + strand, within PP_4592at 5211.743 kb on + strand, within PP_4592at 5211.743 kb on + strand, within PP_4592at 5211.743 kb on + strand, within PP_4592at 5211.744 kb on - strand, within PP_4592at 5211.744 kb on - strand, within PP_4592at 5211.747 kb on + strand, within PP_4592at 5211.762 kb on - strand, within PP_4592at 5211.762 kb on - strand, within PP_4592at 5211.874 kb on + strandat 5211.874 kb on + strandat 5211.874 kb on + strandat 5211.874 kb on + strandat 5211.874 kb on + strandat 5211.874 kb on + strandat 5211.875 kb on - strandat 5211.875 kb on - strandat 5211.875 kb on - strandat 5211.875 kb on - strandat 5211.875 kb on - strandat 5211.875 kb on - strandat 5211.895 kb on - strandat 5211.895 kb on - strandat 5211.961 kb on - strandat 5212.017 kb on + strandat 5212.081 kb on - strandat 5212.151 kb on + strandat 5212.151 kb on + strandat 5212.151 kb on + strandat 5212.151 kb on + strandat 5212.172 kb on + strandat 5212.302 kb on + strand, within PP_4593at 5212.303 kb on - strand, within PP_4593at 5212.445 kb on + strandat 5212.446 kb on - strandat 5212.484 kb on + strandat 5212.485 kb on - strandat 5212.485 kb on - strandat 5212.485 kb on - strandat 5212.494 kb on + strandat 5212.494 kb on + strandat 5212.495 kb on - strandat 5212.779 kb on + strand, within PP_4594at 5212.864 kb on + strand, within PP_4594at 5212.864 kb on + strand, within PP_4594at 5212.865 kb on - strand, within PP_4594at 5212.865 kb on - strand, within PP_4594at 5212.865 kb on - strand, within PP_4594at 5212.865 kb on - strand, within PP_4594at 5212.976 kb on - strand, within PP_4594at 5212.976 kb on - strand, within PP_4594at 5213.095 kb on + strand, within PP_4594at 5213.096 kb on - strand, within PP_4594at 5213.096 kb on - strand, within PP_4594at 5213.096 kb on - strand, within PP_4594at 5213.096 kb on - strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.330 kb on - strand, within PP_4594at 5213.330 kb on - strand, within PP_4594at 5213.330 kb on - strand, within PP_4594at 5213.330 kb on - strand, within PP_4594at 5213.392 kb on + strand, within PP_4594at 5213.522 kb on - strand, within PP_4594at 5213.522 kb on - strand, within PP_4594at 5213.554 kb on + strand, within PP_4594at 5213.555 kb on - strand, within PP_4594at 5213.571 kb on - strand, within PP_4594at 5213.667 kb on - strandat 5213.733 kb on + strandat 5213.733 kb on + strandat 5213.733 kb on + strandat 5213.777 kb on + strandat 5213.803 kb on + strandat 5213.838 kb on + strand, within PP_4595at 5213.939 kb on + strand, within PP_4595at 5213.939 kb on + strand, within PP_4595at 5213.939 kb on + strand, within PP_4595at 5213.940 kb on - strand, within PP_4595at 5213.940 kb on - strand, within PP_4595at 5214.089 kb on + strand, within PP_4595at 5214.089 kb on + strand, within PP_4595at 5214.113 kb on + strand, within PP_4595at 5214.113 kb on + strand, within PP_4595at 5214.113 kb on + strand, within PP_4595at 5214.113 kb on + strand, within PP_4595at 5214.114 kb on - strand, within PP_4595at 5214.114 kb on - strand, within PP_4595at 5214.139 kb on + strand, within PP_4595at 5214.139 kb on + strand, within PP_4595at 5214.139 kb on + strand, within PP_4595at 5214.140 kb on - strand, within PP_4595at 5214.149 kb on + strand, within PP_4595at 5214.150 kb on - strand, within PP_4595at 5214.150 kb on - strand, within PP_4595at 5214.162 kb on - strand, within PP_4595at 5214.176 kb on - strand, within PP_4595at 5214.234 kb on - strandat 5214.234 kb on - strandat 5214.332 kb on + strandat 5214.332 kb on + strandat 5214.333 kb on - strandat 5214.333 kb on - strandat 5214.333 kb on - strandat 5214.458 kb on + strandat 5214.459 kb on - strandat 5214.459 kb on - strandat 5214.460 kb on + strandat 5214.460 kb on + strandat 5214.460 kb on + strandat 5214.461 kb on - strandat 5214.461 kb on - strandat 5214.461 kb on - strandat 5214.461 kb on - strandat 5214.475 kb on + strandat 5214.475 kb on + strandat 5214.475 kb on + strandat 5214.514 kb on + strandat 5214.515 kb on - strandat 5214.515 kb on - strandat 5214.515 kb on - strandat 5214.545 kb on - strandat 5214.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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5,211,583 + PP_4592 0.78 -1.4
5,211,583 + +0.6
5,211,584 - PP_4592 0.78 -1.3
5,211,585 + PP_4592 0.78 +0.7
5,211,585 + PP_4592 0.78 -0.3
5,211,585 + PP_4592 0.78 -0.3
5,211,586 - PP_4592 0.78 -0.6
5,211,586 - PP_4592 0.78 -0.7
5,211,586 - PP_4592 0.78 +0.7
5,211,646 + PP_4592 0.81 -0.4
5,211,667 + PP_4592 0.83 -0.8
5,211,667 + PP_4592 0.83 +2.1
5,211,668 - PP_4592 0.83 +1.0
5,211,668 - PP_4592 0.83 +1.1
5,211,671 + PP_4592 0.83 +0.5
5,211,678 + PP_4592 0.83 -0.7
5,211,693 + PP_4592 0.84 -0.5
5,211,693 + PP_4592 0.84 +1.3
5,211,694 - PP_4592 0.84 +1.0
5,211,727 + PP_4592 0.86 -1.4
5,211,727 + PP_4592 0.86 -0.4
5,211,727 + PP_4592 0.86 +0.6
5,211,728 - PP_4592 0.86 -1.3
5,211,731 + PP_4592 0.87 +0.7
5,211,732 - PP_4592 0.87 +1.2
5,211,732 - PP_4592 0.87 -0.0
5,211,732 - PP_4592 0.87 +0.1
5,211,743 + PP_4592 0.87 -0.3
5,211,743 + PP_4592 0.87 +1.0
5,211,743 + PP_4592 0.87 -1.8
5,211,743 + PP_4592 0.87 -0.4
5,211,743 + PP_4592 0.87 -0.0
5,211,744 - PP_4592 0.87 +0.1
5,211,744 - PP_4592 0.87 +0.7
5,211,747 + PP_4592 0.88 -0.3
5,211,762 - PP_4592 0.89 -1.1
5,211,762 - PP_4592 0.89 +0.5
5,211,874 + -1.5
5,211,874 + -0.6
5,211,874 + -0.7
5,211,874 + -0.5
5,211,874 + +0.2
5,211,874 + +1.3
5,211,875 - +0.0
5,211,875 - -1.9
5,211,875 - -1.2
5,211,875 - +0.1
5,211,875 - +0.9
5,211,875 - -2.7
5,211,895 - -2.6
5,211,895 - -0.8
5,211,961 - -0.6
5,212,017 + -0.0
5,212,081 - +1.2
5,212,151 + -1.0
5,212,151 + -0.9
5,212,151 + +0.4
5,212,151 + -1.8
5,212,172 + +0.9
5,212,302 + PP_4593 0.43 -0.2
5,212,303 - PP_4593 0.43 -0.3
5,212,445 + +0.1
5,212,446 - +1.3
5,212,484 + -1.2
5,212,485 - -1.3
5,212,485 - -0.7
5,212,485 - +0.3
5,212,494 + -0.6
5,212,494 + +1.6
5,212,495 - -1.5
5,212,779 + PP_4594 0.21 -1.4
5,212,864 + PP_4594 0.28 -1.6
5,212,864 + PP_4594 0.28 +0.3
5,212,865 - PP_4594 0.28 -0.4
5,212,865 - PP_4594 0.28 +0.9
5,212,865 - PP_4594 0.28 -0.6
5,212,865 - PP_4594 0.28 -0.1
5,212,976 - PP_4594 0.38 -0.6
5,212,976 - PP_4594 0.38 -1.1
5,213,095 + PP_4594 0.48 -0.9
5,213,096 - PP_4594 0.48 +0.4
5,213,096 - PP_4594 0.48 -0.1
5,213,096 - PP_4594 0.48 -1.3
5,213,096 - PP_4594 0.48 +2.0
5,213,329 + PP_4594 0.68 -0.8
5,213,329 + PP_4594 0.68 +1.1
5,213,329 + PP_4594 0.68 -1.2
5,213,329 + PP_4594 0.68 +0.2
5,213,329 + PP_4594 0.68 -1.1
5,213,329 + PP_4594 0.68 -0.1
5,213,329 + PP_4594 0.68 -0.2
5,213,330 - PP_4594 0.68 -0.8
5,213,330 - PP_4594 0.68 +1.3
5,213,330 - PP_4594 0.68 +0.7
5,213,330 - PP_4594 0.68 -0.1
5,213,392 + PP_4594 0.73 -1.5
5,213,522 - PP_4594 0.84 +1.4
5,213,522 - PP_4594 0.84 -1.3
5,213,554 + PP_4594 0.87 -1.0
5,213,555 - PP_4594 0.87 -2.2
5,213,571 - PP_4594 0.88 -0.3
5,213,667 - -0.5
5,213,733 + -0.1
5,213,733 + -0.2
5,213,733 + -0.5
5,213,777 + -1.1
5,213,803 + -1.1
5,213,838 + PP_4595 0.14 -0.9
5,213,939 + PP_4595 0.34 +0.3
5,213,939 + PP_4595 0.34 -1.9
5,213,939 + PP_4595 0.34 -0.6
5,213,940 - PP_4595 0.34 +1.2
5,213,940 - PP_4595 0.34 +0.2
5,214,089 + PP_4595 0.64 -0.4
5,214,089 + PP_4595 0.64 +0.7
5,214,113 + PP_4595 0.69 +1.2
5,214,113 + PP_4595 0.69 +0.1
5,214,113 + PP_4595 0.69 +1.2
5,214,113 + PP_4595 0.69 +2.0
5,214,114 - PP_4595 0.69 +0.9
5,214,114 - PP_4595 0.69 -0.4
5,214,139 + PP_4595 0.74 +1.7
5,214,139 + PP_4595 0.74 +1.8
5,214,139 + PP_4595 0.74 -0.8
5,214,140 - PP_4595 0.75 -0.5
5,214,149 + PP_4595 0.76 -0.0
5,214,150 - PP_4595 0.77 -2.0
5,214,150 - PP_4595 0.77 +0.5
5,214,162 - PP_4595 0.79 -1.9
5,214,176 - PP_4595 0.82 -1.1
5,214,234 - +0.5
5,214,234 - -0.6
5,214,332 + +1.5
5,214,332 + +0.4
5,214,333 - -0.5
5,214,333 - -1.4
5,214,333 - +0.0
5,214,458 + -0.4
5,214,459 - -2.6
5,214,459 - +0.0
5,214,460 + +1.0
5,214,460 + -1.3
5,214,460 + -0.0
5,214,461 - -1.8
5,214,461 - +1.5
5,214,461 - -0.7
5,214,461 - +0.1
5,214,475 + -0.5
5,214,475 + +0.7
5,214,475 + -2.4
5,214,514 + +1.8
5,214,515 - -1.2
5,214,515 - -0.6
5,214,515 - +0.7
5,214,545 - +0.8
5,214,545 - -2.1

Or see this region's nucleotide sequence