Strain Fitness in Pseudomonas putida KT2440 around PP_4556

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,177,938	-				-0.4
5,178,411	-		PP_4554	0.84	-0.6
5,178,548	-		PP_4555	0.11	-0.1
5,178,548	-		PP_4555	0.11	-1.7
5,178,548	-		PP_4555	0.11	-0.3
5,178,618	+		PP_4555	0.32	-1.1
5,178,692	+		PP_4555	0.53	-1.3
5,178,831	+				-0.6
5,178,831	+				+0.4
5,178,832	-				+0.1
5,178,832	-				-2.1
5,178,832	-				+0.6
5,178,846	+				+1.5
5,178,846	+				-0.6
5,178,847	-				+1.2
5,178,847	-				+0.4
5,178,869	-				-2.2
5,178,967	+		PP_4556	0.16	-0.8
5,178,967	+		PP_4556	0.16	-1.5
5,178,968	-		PP_4556	0.16	+0.4
5,178,968	-		PP_4556	0.16	-1.5
5,179,167	-		PP_4556	0.63	-2.4
5,179,329	+				+0.4
5,179,329	+				-1.1
5,179,346	-				-0.2
5,179,346	-				-2.2
5,179,346	-				+1.1
5,179,346	-				-1.0
5,179,381	+				-0.4
5,179,382	-				-1.0
5,179,382	-				-1.4
5,179,382	-				-2.4
5,179,394	+				-1.4
5,179,424	+				-0.2
5,179,431	+				-1.3
5,179,585	+		PP_4557	0.27	+0.6
5,179,585	+		PP_4557	0.27	-1.1
5,179,585	+		PP_4557	0.27	+0.8
5,179,585	+		PP_4557	0.27	+0.4
5,179,585	+		PP_4557	0.27	+1.4
5,179,586	-		PP_4557	0.28	+0.3
5,179,586	-		PP_4557	0.28	-0.6
5,179,586	-		PP_4557	0.28	-0.6
5,179,586	-		PP_4557	0.28	+1.5
5,179,586	-		PP_4557	0.28	-1.7
5,179,586	-		PP_4557	0.28	+0.2
5,179,603	-		PP_4557	0.34	-0.4
5,179,603	-		PP_4557	0.34	-0.2
5,179,603	-		PP_4557	0.34	+0.3
5,179,669	+		PP_4557	0.60	-0.2
5,179,669	+		PP_4557	0.60	+0.2
5,179,675	+		PP_4557	0.62	-1.4
5,179,676	-		PP_4557	0.62	-0.7
5,179,739	+		PP_4557	0.87	-1.3
5,179,739	+		PP_4557	0.87	-0.3
5,179,739	+		PP_4557	0.87	-1.9
5,179,740	-		PP_4557	0.87	-1.2
5,179,762	-				+1.0
5,179,816	-				-1.0
5,179,816	-				+1.2
5,179,816	-				-1.2
5,179,816	-				-0.9
5,179,816	-				-1.6
5,179,816	-				+0.1
5,179,848	+				-0.0
5,179,848	+				+0.6
5,179,848	+				-0.0
5,179,855	+				+0.7
5,179,855	+				-1.1
5,179,855	+				-0.2
5,179,855	+				-1.0
5,179,855	+				+0.5
5,179,856	-				+0.1
5,179,856	-				+1.5
5,179,870	-				-0.5
5,179,886	-				-0.3
5,180,058	+				-1.2
5,180,058	+				+0.0
5,180,059	-				-0.4
5,180,059	-				-1.4
5,180,106	+		PP_4558	0.12	+1.4
5,180,107	-		PP_4558	0.12	-0.4
5,180,107	-		PP_4558	0.12	+1.0
5,180,158	+		PP_4558	0.23	-0.4
5,180,158	+		PP_4558	0.23	+0.5
5,180,159	-		PP_4558	0.24	-1.1