Strain Fitness in Pseudomonas putida KT2440 around PP_4426

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,020,780	-				-0.5
5,020,935	+		PP_4425	0.13	+0.9
5,020,935	+		PP_4425	0.13	-0.0
5,020,936	-		PP_4425	0.14	-0.9
5,020,988	-		PP_4425	0.20	-1.2
5,020,993	+		PP_4425	0.21	-0.2
5,020,993	+		PP_4425	0.21	-0.0
5,020,993	+		PP_4425	0.21	-0.9
5,020,994	-		PP_4425	0.21	+0.1
5,020,994	-		PP_4425	0.21	-1.0
5,020,994	-		PP_4425	0.21	+0.7
5,021,008	+		PP_4425	0.23	+0.2
5,021,009	-		PP_4425	0.23	+0.7
5,021,009	-		PP_4425	0.23	-1.7
5,021,126	+		PP_4425	0.38	-0.2
5,021,127	-		PP_4425	0.38	-0.1
5,021,169	+		PP_4425	0.44	-2.6
5,021,243	+				+1.8
5,021,291	-		PP_4425	0.60	-1.5
5,021,321	+		PP_4425	0.64	-0.1
5,021,321	+		PP_4425	0.64	+0.1
5,021,322	-		PP_4425	0.64	+0.5
5,021,322	-		PP_4425	0.64	+0.6
5,021,322	-		PP_4425	0.64	+0.2
5,021,330	+		PP_4425	0.65	-2.2
5,021,330	+		PP_4425	0.65	-0.7
5,021,330	+		PP_4425	0.65	+0.4
5,021,569	-				-1.0
5,021,593	+				-0.3
5,021,593	+				-2.5
5,021,667	-				+0.2
5,021,700	-				-0.4
5,021,777	-		PP_4426	0.12	+0.5
5,021,857	-		PP_4426	0.24	-0.9
5,021,875	-		PP_4426	0.27	+0.3
5,022,033	-		PP_4426	0.51	+0.5
5,022,035	-		PP_4426	0.51	-0.6
5,022,061	+		PP_4426	0.55	-0.7
5,022,292	-				+0.7
5,022,326	-				-0.1
5,022,333	-				-0.3
5,022,333	-				-0.1
5,022,433	-		PP_4427	0.12	+1.3
5,022,439	+		PP_4427	0.13	+0.1
5,022,454	-		PP_4427	0.15	-0.7
5,022,530	+		PP_4427	0.27	-0.1
5,022,531	-		PP_4427	0.27	+0.1
5,022,681	-		PP_4427	0.50	-1.5
5,022,709	-		PP_4427	0.54	+0.2
5,022,709	-		PP_4427	0.54	+0.1
5,022,709	-		PP_4427	0.54	+0.6
5,022,722	-		PP_4427	0.56	-0.6
5,022,732	-		PP_4427	0.58	+2.8
5,022,764	-		PP_4427	0.62	-0.1
5,022,860	-		PP_4427	0.77	-1.2
5,022,860	-		PP_4427	0.77	+0.2
5,022,989	+				-0.5
5,022,989	+				-0.1
5,022,989	+				+0.1
5,022,989	+				+1.3
5,022,990	-				-1.1
5,022,990	-				-1.7
5,022,990	-				+1.9
5,022,990	-				-0.5
5,022,999	+				-0.4
5,023,000	-				+0.2
5,023,018	+				+0.0
5,023,028	+				+0.4
5,023,029	-				-0.6
5,023,082	+				-2.6
5,023,113	+				+0.3
5,023,292	-		PP_4428	0.25	+1.0
5,023,342	+		PP_4428	0.31	-0.2
5,023,343	-		PP_4428	0.31	+0.7