Strain Fitness in Pseudomonas putida KT2440 around PP_4309

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,899,563	+				+1.2
4,899,563	+				-0.0
4,899,563	+				+0.4
4,899,563	+				-1.1
4,899,564	-				-1.2
4,899,564	-				-1.2
4,899,576	-				-1.6
4,899,601	+				-0.5
4,899,624	+				-0.8
4,899,753	-		PP_4308	0.34	-1.6
4,899,754	+		PP_4308	0.35	-0.6
4,899,754	+		PP_4308	0.35	+0.7
4,899,755	-		PP_4308	0.35	-0.5
4,899,785	+		PP_4308	0.42	+0.4
4,900,088	+				+0.4
4,900,132	-				-1.9
4,900,196	+				-2.6
4,900,262	+				+0.5
4,900,300	-				-1.1
4,900,398	+				+0.1
4,900,399	-				+0.8
4,900,543	-				-0.6
4,900,569	-				-0.0
4,900,668	+				+0.7
4,900,694	-		PP_4309	0.10	-0.3
4,900,741	+		PP_4309	0.13	-0.2
4,900,741	+		PP_4309	0.13	-0.9
4,900,741	+		PP_4309	0.13	-2.0
4,900,742	-		PP_4309	0.13	-1.0
4,900,742	-		PP_4309	0.13	-0.1
4,900,792	-		PP_4309	0.17	+0.2
4,900,850	-		PP_4309	0.20	+0.4
4,900,975	+		PP_4309	0.29	+0.3
4,900,976	-		PP_4309	0.29	-0.6
4,901,027	+		PP_4309	0.32	+0.4
4,901,035	+		PP_4309	0.32	-1.7
4,901,036	-		PP_4309	0.33	-1.6
4,901,123	-		PP_4309	0.38	-1.6
4,901,206	+				+2.0
4,901,207	-		PP_4309	0.44	+0.1
4,901,311	+		PP_4309	0.50	-0.4
4,901,312	-		PP_4309	0.51	-0.1
4,901,504	+		PP_4309	0.63	-0.0
4,901,600	+		PP_4309	0.69	-0.7
4,901,600	+		PP_4309	0.69	-2.9
4,901,692	+		PP_4309	0.75	-0.3
4,901,692	+		PP_4309	0.75	-0.3
4,901,692	+		PP_4309	0.75	-1.5
4,901,693	-		PP_4309	0.75	-2.6
4,901,716	+		PP_4309	0.77	-2.5
4,901,776	+		PP_4309	0.81	-0.6
4,901,819	-		PP_4309	0.84	-1.0
4,901,819	-		PP_4309	0.84	+1.2
4,901,819	-		PP_4309	0.84	+1.1
4,901,820	+				+1.3
4,901,820	+		PP_4309	0.84	+0.0
4,901,849	-		PP_4309	0.86	+0.2
4,901,849	-		PP_4309	0.86	-1.4
4,901,987	+				+0.5
4,901,987	+				-0.7
4,901,989	+				+0.3
4,901,989	+				-0.1
4,901,990	-				-0.3
4,901,997	+				-2.6
4,902,009	+				-1.0
4,902,020	-				-0.4
4,902,020	-				-0.7
4,902,091	+				+0.3
4,902,091	+				+1.2
4,902,092	-				-1.0
4,902,092	-				-1.2
4,902,236	+		PP_4310	0.21	+0.1
4,902,237	-		PP_4310	0.21	+0.2
4,902,287	+		PP_4310	0.28	+0.2
4,902,287	+		PP_4310	0.28	-2.1
4,902,288	-		PP_4310	0.28	+1.8
4,902,288	-		PP_4310	0.28	-1.9
4,902,371	-		PP_4310	0.39	-0.5
4,902,398	+		PP_4310	0.43	-0.6
4,902,398	+		PP_4310	0.43	-0.7
4,902,399	-		PP_4310	0.43	+1.2
4,902,399	-		PP_4310	0.43	-0.5
4,902,399	-		PP_4310	0.43	-2.8
4,902,403	-		PP_4310	0.43	-1.1
4,902,403	-		PP_4310	0.43	-2.1
4,902,403	-		PP_4310	0.43	+0.5
4,902,413	+		PP_4310	0.45	-2.5
4,902,420	+		PP_4310	0.46	-1.1
4,902,421	-		PP_4310	0.46	-1.3
4,902,421	-		PP_4310	0.46	+0.8
4,902,423	+		PP_4310	0.46	-1.6
4,902,424	-		PP_4310	0.46	+1.8
4,902,482	+		PP_4310	0.54	-0.8
4,902,758	+				-1.5
4,902,759	-				-1.5
4,902,759	-				-1.3
4,902,859	+				+0.7
4,902,882	+				+0.7
4,902,899	-				+1.6
4,902,899	-				+0.4
4,903,024	+				+2.4
4,903,025	-				-0.4
4,903,038	+				+0.5
4,903,038	+				+0.7
4,903,039	-				+1.7
4,903,039	-				+0.8
4,903,039	-				+1.0
4,903,039	-				+0.2
4,903,039	-				-0.8
4,903,039	-				-0.1