Strain Fitness in Pseudomonas putida KT2440 around PP_4162

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,704,465	-		PP_4161	0.59	+0.4
4,704,775	+		PP_4161	0.77	-1.0
4,704,775	+		PP_4161	0.77	+0.3
4,704,775	+		PP_4161	0.77	+0.1
4,704,776	-		PP_4161	0.77	-0.4
4,704,799	+		PP_4161	0.78	+0.9
4,704,967	+		PP_4161	0.88	-0.0
4,704,967	+		PP_4161	0.88	+0.7
4,704,967	+		PP_4161	0.88	-0.7
4,704,968	-		PP_4161	0.88	-1.2
4,704,968	-		PP_4161	0.88	+1.7
4,705,081	+				+0.3
4,705,082	-				-0.2
4,705,082	-				-1.0
4,705,082	-				+1.1
4,705,082	-				+0.7
4,705,084	+				+0.1
4,705,153	+				-0.8
4,705,154	-				-0.7
4,705,174	+				-1.2
4,705,174	+				+0.5
4,705,174	+				+0.4
4,705,174	+				-0.5
4,705,324	+				-0.5
4,705,324	+				+0.5
4,705,325	-				-1.6
4,705,357	+				-0.8
4,705,368	+				-2.3
4,705,433	-				-1.5
4,705,433	-				+0.4
4,705,440	+				+1.7
4,705,440	+				-0.6
4,705,440	+				-0.7
4,705,441	-				-0.4
4,705,441	-				-2.3
4,705,906	-		PP_4162	0.44	+1.8
4,706,077	-		PP_4162	0.61	+0.6
4,706,092	+		PP_4162	0.62	+1.0
4,706,092	+		PP_4162	0.62	+1.0
4,706,092	+		PP_4162	0.62	-0.9
4,706,092	+		PP_4162	0.62	+1.3
4,706,093	-		PP_4162	0.62	-0.9
4,706,225	-		PP_4162	0.75	-1.5
4,706,672	+		PP_4163	0.21	+1.9
4,706,706	+		PP_4163	0.25	-0.1
4,706,747	-		PP_4163	0.31	+1.0
4,706,809	-		PP_4163	0.38	-1.4
4,706,809	-		PP_4163	0.38	-0.6
4,706,839	-		PP_4163	0.42	+0.7
4,706,839	-		PP_4163	0.42	+0.5
4,707,009	-		PP_4163	0.64	-0.3
4,707,050	-		PP_4163	0.69	-1.0
4,707,069	+		PP_4163	0.71	-0.6
4,707,434	+				+0.4
4,707,434	+				-0.7