Strain Fitness in Pseudomonas putida KT2440 around PP_4158

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,697,041	-		PP_4156	0.74	+0.3
4,697,086	-		PP_4156	0.79	+0.4
4,697,385	+				-0.9
4,697,456	+		PP_4157	0.17	-1.0
4,697,456	+		PP_4157	0.17	-0.1
4,697,457	-		PP_4157	0.17	-0.3
4,697,490	+		PP_4157	0.21	+0.8
4,697,490	+		PP_4157	0.21	-1.3
4,697,515	-		PP_4157	0.25	-0.5
4,697,558	+		PP_4157	0.31	-0.4
4,697,558	+		PP_4157	0.31	-0.3
4,697,559	-		PP_4157	0.31	+0.3
4,697,735	+		PP_4157	0.57	+0.5
4,697,735	+		PP_4157	0.57	-0.1
4,697,736	-		PP_4157	0.57	-1.7
4,697,736	-		PP_4157	0.57	+0.4
4,697,736	-		PP_4157	0.57	+0.2
4,697,839	+		PP_4157	0.72	-1.4
4,697,839	+		PP_4157	0.72	-1.7
4,697,839	+		PP_4157	0.72	+1.2
4,697,840	-		PP_4157	0.72	+0.9
4,697,951	+		PP_4157	0.88	+0.0
4,697,952	-		PP_4157	0.88	+0.1
4,697,952	-		PP_4157	0.88	-0.7
4,697,973	+				+0.2
4,697,974	-				-1.6
4,698,081	+				+1.6
4,698,081	+				+2.5
4,698,082	-				-1.0
4,698,082	-				+1.4
4,698,082	-				+1.5
4,698,082	-				-1.6
4,698,082	-				+1.1
4,698,082	-				+0.5
4,698,164	+				+0.1
4,698,165	-				-0.3
4,698,165	-				-0.5
4,698,218	-				-1.1
4,698,218	-				-0.6
4,698,218	-				-0.4
4,698,224	+				+1.5
4,698,225	-				+1.0
4,698,225	-				+0.2
4,698,225	-				+0.6
4,698,225	-				+0.3
4,698,572	-		PP_4158	0.20	+1.2
4,698,941	+		PP_4158	0.34	-0.9
4,698,951	-		PP_4158	0.35	-1.5
4,699,333	-		PP_4158	0.49	-1.5
4,699,348	+		PP_4158	0.50	+0.2
4,699,348	+		PP_4158	0.50	+0.5
4,699,349	-		PP_4158	0.50	-1.4
4,699,349	-		PP_4158	0.50	-0.2
4,699,349	-		PP_4158	0.50	-1.3
4,699,349	-		PP_4158	0.50	+0.4
4,699,442	+		PP_4158	0.53	-0.4
4,699,519	+		PP_4158	0.56	-2.8
4,699,519	+		PP_4158	0.56	-2.2
4,699,519	+		PP_4158	0.56	-0.9
4,699,728	-		PP_4158	0.64	+1.0
4,700,107	+				+4.8
4,700,107	+		PP_4158	0.78	-0.2
4,700,281	+		PP_4158	0.85	-1.5
4,700,281	+		PP_4158	0.85	+1.4
4,700,282	-		PP_4158	0.85	+1.0
4,700,282	-		PP_4158	0.85	-1.9
4,700,282	-		PP_4158	0.85	-1.7
4,700,699	+				-2.9
4,700,699	+				-0.8
4,700,700	-				-1.0
4,700,746	+				+0.9
4,700,747	-				-0.6
4,700,768	+				-0.6
4,700,812	+				-0.6
4,700,992	-		PP_4159	0.28	+0.1
4,701,169	-		PP_4159	0.59	+0.3
4,701,308	-		PP_4159	0.84	-2.2
4,701,380	+				-1.0
4,701,380	+				+0.6
4,701,384	+				+2.0
4,701,384	+				-0.3
4,701,384	+				+0.1
4,701,384	+				-0.5
4,701,384	+				+1.0
4,701,385	-				+0.4
4,701,385	-				+1.2
4,701,385	-				-0.1
4,701,385	-				-1.4
4,701,385	-				-0.5
4,701,570	-				+0.9
4,701,659	-		PP_4160	0.12	+0.5