Strain Fitness in Pseudomonas putida KT2440 around PP_4155

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,694,128	-		PP_4154	0.68	+0.2
4,694,398	-		PP_4154	0.78	-1.0
4,694,448	+		PP_4154	0.79	-1.0
4,694,448	+		PP_4154	0.79	+1.2
4,694,448	+		PP_4154	0.79	+0.4
4,694,500	+		PP_4154	0.81	-0.0
4,694,501	-		PP_4154	0.81	-0.8
4,694,501	-		PP_4154	0.81	-1.0
4,694,501	-		PP_4154	0.81	-0.4
4,694,505	+		PP_4154	0.81	-1.3
4,694,523	+		PP_4154	0.82	+0.4
4,694,567	+		PP_4154	0.83	+1.8
4,694,567	+		PP_4154	0.83	-2.3
4,694,567	+		PP_4154	0.83	-0.1
4,694,567	+		PP_4154	0.83	-1.4
4,694,567	+		PP_4154	0.83	+0.5
4,694,568	-		PP_4154	0.83	-0.2
4,694,568	-				+1.8
4,694,655	+		PP_4154	0.86	-1.2
4,694,767	-				+0.3
4,694,839	-				+0.9
4,695,012	+				+0.1
4,695,012	+				+0.3
4,695,012	+				+1.4
4,695,013	-				+0.9
4,695,013	-				-2.2
4,695,013	-				-0.6
4,695,055	-				-0.4
4,695,055	-				+0.7
4,695,247	+		PP_4155	0.15	+0.6
4,695,255	+		PP_4155	0.16	-2.5
4,695,255	+		PP_4155	0.16	+1.3
4,695,255	+		PP_4155	0.16	-0.7
4,695,256	-		PP_4155	0.16	-0.0
4,695,259	+		PP_4155	0.16	+2.5
4,695,260	-		PP_4155	0.16	+1.4
4,695,260	-		PP_4155	0.16	-1.8
4,695,354	+		PP_4155	0.24	+0.2
4,695,354	+		PP_4155	0.24	+1.1
4,695,355	-		PP_4155	0.24	+0.1
4,695,364	-		PP_4155	0.25	-0.9
4,695,375	-		PP_4155	0.26	-0.2
4,695,375	-		PP_4155	0.26	-1.0
4,695,535	+		PP_4155	0.39	-0.7
4,695,551	+		PP_4155	0.40	-0.3
4,695,551	+		PP_4155	0.40	+0.3
4,695,551	+		PP_4155	0.40	+3.6
4,695,552	-		PP_4155	0.40	+0.3
4,695,627	+		PP_4155	0.46	+0.3
4,695,628	-		PP_4155	0.46	+1.6
4,695,628	-		PP_4155	0.46	+2.7
4,695,691	+		PP_4155	0.52	-0.5
4,695,692	-		PP_4155	0.52	+1.0
4,696,127	+		PP_4155	0.87	-0.9
4,696,127	+		PP_4155	0.87	+0.2
4,696,127	+		PP_4155	0.87	-0.2
4,696,128	-		PP_4155	0.87	-0.1
4,696,219	+				-0.1
4,696,220	-				-1.2
4,696,220	-				+2.1
4,696,750	+		PP_4156	0.42	-0.5
4,696,751	-		PP_4156	0.42	+1.0
4,697,041	-		PP_4156	0.74	+0.3
4,697,086	-		PP_4156	0.79	+0.4