Strain Fitness in Pseudomonas putida KT2440 around PP_4073

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,600,390	+		PP_4072	0.40	+0.5
4,600,391	-		PP_4072	0.40	+1.1
4,600,391	-		PP_4072	0.40	-0.2
4,600,391	-		PP_4072	0.40	+0.6
4,600,416	-		PP_4072	0.42	-2.4
4,600,455	+		PP_4072	0.44	+0.0
4,600,455	+		PP_4072	0.44	-0.1
4,600,456	-		PP_4072	0.44	+0.6
4,600,456	-		PP_4072	0.44	-0.4
4,600,538	+		PP_4072	0.50	+0.1
4,600,702	-		PP_4072	0.61	-1.4
4,600,702	-		PP_4072	0.61	+1.0
4,600,789	+		PP_4072	0.67	-0.4
4,600,790	-		PP_4072	0.67	+1.5
4,600,838	+		PP_4072	0.70	+0.9
4,600,838	+		PP_4072	0.70	+0.1
4,600,838	+		PP_4072	0.70	+0.5
4,600,839	-		PP_4072	0.70	-0.8
4,600,839	-		PP_4072	0.70	+0.5
4,600,955	+		PP_4072	0.78	+0.3
4,600,955	+		PP_4072	0.78	+0.0
4,600,955	+		PP_4072	0.78	+0.4
4,600,956	-		PP_4072	0.78	+0.2
4,600,956	-		PP_4072	0.78	+0.8
4,600,956	-		PP_4072	0.78	-0.8
4,600,956	-		PP_4072	0.78	+0.5
4,600,956	-		PP_4072	0.78	+0.8
4,601,078	+		PP_4072	0.87	-0.9
4,601,078	+		PP_4072	0.87	-1.8
4,601,102	+		PP_4072	0.88	+0.3
4,601,168	+				-1.7
4,601,169	-				-0.5
4,601,169	-				-0.0
4,601,260	+				-2.3
4,601,260	+				-0.8
4,601,261	-				-0.4
4,601,352	+		PP_4073	0.15	-1.7
4,601,353	-		PP_4073	0.15	+1.8
4,601,353	-		PP_4073	0.15	+0.3
4,601,877	-				-0.2
4,601,877	-				-0.1
4,601,918	+				+1.8
4,601,919	-				-1.7
4,601,967	+				+0.5
4,602,089	-				-0.5
4,602,113	-				-1.4
4,602,130	+				-0.3
4,602,131	-				-0.9
4,602,134	+				+0.1
4,602,134	+				-0.8
4,602,217	+		PP_4074	0.10	+0.1
4,602,217	+		PP_4074	0.10	-0.4
4,602,217	+		PP_4074	0.10	-0.6
4,602,217	+		PP_4074	0.10	-0.7
4,602,218	-		PP_4074	0.10	+0.7
4,602,251	+		PP_4074	0.17	-1.2
4,602,801	+				+0.8