Strain Fitness in Pseudomonas putida KT2440 around PP_4043

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,555,511	+		PP_4042	0.35	+0.1
4,555,512	-		PP_4042	0.35	-0.9
4,555,512	-		PP_4042	0.35	+0.0
4,555,512	-		PP_4042	0.35	+0.1
4,555,512	-		PP_4042	0.35	-0.3
4,555,512	-		PP_4042	0.35	+0.1
4,555,512	-		PP_4042	0.35	+0.2
4,555,595	+		PP_4042	0.40	+0.3
4,555,606	+		PP_4042	0.41	-1.2
4,555,781	+		PP_4042	0.52	-0.7
4,555,781	+		PP_4042	0.52	-0.0
4,555,781	+		PP_4042	0.52	+0.4
4,555,781	+		PP_4042	0.52	-2.5
4,555,782	-		PP_4042	0.53	+0.3
4,555,782	-		PP_4042	0.53	-1.5
4,555,844	+		PP_4042	0.57	-0.3
4,555,844	+		PP_4042	0.57	+0.8
4,555,844	+		PP_4042	0.57	+1.1
4,555,844	+		PP_4042	0.57	-1.1
4,555,844	+		PP_4042	0.57	+0.6
4,555,844	+		PP_4042	0.57	+1.9
4,555,844	+		PP_4042	0.57	-2.3
4,555,845	-		PP_4042	0.57	-0.4
4,555,899	+		PP_4042	0.60	+0.1
4,555,899	+		PP_4042	0.60	+0.4
4,555,900	-		PP_4042	0.60	+0.0
4,555,900	-		PP_4042	0.60	+0.6
4,555,900	-		PP_4042	0.60	-1.6
4,555,926	-		PP_4042	0.62	-2.1
4,555,926	-		PP_4042	0.62	+0.6
4,555,940	+		PP_4042	0.63	-2.4
4,556,177	+		PP_4042	0.79	-0.6
4,556,177	+		PP_4042	0.79	-1.3
4,556,211	-				+3.6
4,556,239	+		PP_4042	0.83	-0.4
4,556,239	+		PP_4042	0.83	-0.5
4,556,239	+		PP_4042	0.83	-2.3
4,556,240	-		PP_4042	0.83	-0.2
4,556,240	-		PP_4042	0.83	+0.1
4,556,240	-		PP_4042	0.83	+0.9
4,556,340	+		PP_4042	0.90	-0.4
4,556,340	+		PP_4042	0.90	-0.7
4,556,400	-				-0.6
4,556,400	-				-1.1
4,556,400	-				-1.5
4,556,461	-				-0.5
4,556,560	+				-0.6
4,556,560	+				-0.4
4,556,560	+				-0.1
4,556,560	+				-0.3
4,556,561	-				-1.0
4,556,561	-				+0.9
4,556,561	-				-1.7
4,556,733	-		PP_4043	0.24	-0.1
4,556,870	-		PP_4043	0.38	-0.1
4,556,870	-		PP_4043	0.38	+1.1
4,556,917	+		PP_4043	0.43	-1.6
4,556,918	-		PP_4043	0.43	+0.0
4,556,950	+		PP_4043	0.46	-0.6
4,556,950	+		PP_4043	0.46	+0.4
4,556,950	+				+3.3
4,556,951	-		PP_4043	0.47	-2.2
4,556,951	-		PP_4043	0.47	+0.3
4,557,133	+		PP_4043	0.65	-0.7
4,557,133	+		PP_4043	0.65	+0.2
4,557,134	-		PP_4043	0.65	-0.2
4,557,184	+		PP_4043	0.70	-1.0
4,557,184	+		PP_4043	0.70	-0.9
4,557,184	+		PP_4043	0.70	+0.1
4,557,185	-		PP_4043	0.70	+0.1
4,557,316	-		PP_4043	0.84	+0.8
4,557,447	-				+0.1
4,557,637	+				+1.3
4,557,684	+		PP_4044	0.20	-0.1
4,557,684	+		PP_4044	0.20	+0.1
4,557,684	+		PP_4044	0.20	-1.1
4,557,685	-		PP_4044	0.21	-0.6
4,557,718	+		PP_4044	0.37	-2.4
4,557,718	+		PP_4044	0.37	-1.3
4,557,718	+		PP_4044	0.37	+0.2
4,557,718	+		PP_4044	0.37	-1.1
4,557,718	+		PP_4044	0.37	-0.8
4,557,719	-		PP_4044	0.37	-1.7
4,557,719	-		PP_4044	0.37	-1.6
4,557,719	-		PP_4044	0.37	+1.2
4,557,719	-		PP_4044	0.37	-2.2
4,557,719	-		PP_4044	0.37	+1.0
4,557,753	+		PP_4044	0.54	-0.3
4,557,754	-		PP_4044	0.54	+0.4
4,557,952	+		PP_4045	0.24	+0.6
4,557,957	+		PP_4045	0.25	-2.1
4,557,958	-		PP_4045	0.26	-2.5
4,558,168	+				+0.1
4,558,168	+				-1.9
4,558,169	-				-1.3
4,558,307	+		PP_4046	0.11	-2.1
4,558,307	+		PP_4046	0.11	-0.9
4,558,307	+		PP_4046	0.11	-0.3
4,558,308	-		PP_4046	0.11	+0.1
4,558,308	-		PP_4046	0.11	+0.4