Strain Fitness in Pseudomonas putida KT2440 around PP_4004

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,511,715	+				+0.6
4,511,716	-				+1.4
4,511,716	-				-0.8
4,511,803	-				-0.2
4,512,882	-		PP_4004	0.16	-1.7
4,512,882	-		PP_4004	0.16	-2.2
4,512,882	-		PP_4004	0.16	-0.2
4,512,882	-		PP_4004	0.16	-1.7
4,512,882	-		PP_4004	0.16	-2.1
4,512,882	-		PP_4004	0.16	+0.2
4,512,882	-		PP_4004	0.16	-2.2
4,512,973	-		PP_4004	0.19	-1.6
4,513,222	-		PP_4004	0.29	-1.5
4,513,401	-		PP_4004	0.36	-1.4
4,513,682	-		PP_4004	0.48	-2.2
4,513,694	-		PP_4004	0.48	+0.7
4,514,778	-				-0.5
4,514,778	-				+0.4
4,514,851	-				-0.5
4,514,851	-				-2.1
4,514,851	-				+0.8
4,514,856	-				-1.2
4,514,856	-				-2.8
4,515,027	-				-0.1
4,515,060	-				+0.9
4,515,060	-				+0.7
4,515,071	+				+0.1
4,515,072	-				+2.5
4,515,103	+				+0.5
4,515,133	+				+1.4
4,515,133	+				-1.3
4,515,134	-				+0.3
4,515,134	-				+0.0
4,515,134	-				-2.2
4,515,134	-				-0.6
4,515,175	+				-1.9
4,515,286	+				+0.8
4,515,393	+				-0.4
4,515,543	+		PP_4005	0.21	-2.5
4,515,544	-		PP_4005	0.21	-1.1
4,515,759	+		PP_4005	0.53	+0.7
4,515,834	+		PP_4005	0.64	+1.3
4,515,834	+		PP_4005	0.64	-0.9