Strain Fitness in Pseudomonas putida KT2440 around PP_4002

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,510,076	-				-1.8
4,510,076	-				+0.3
4,510,076	-				-0.9
4,510,076	-				+0.7
4,510,076	-				-1.3
4,510,076	-				+0.4
4,510,076	-				-0.3
4,510,078	-				-0.8
4,510,078	-				+0.0
4,510,078	-				-0.3
4,510,078	-				+0.6
4,510,082	-				+0.5
4,510,082	-				-0.4
4,510,082	-				-1.4
4,510,082	-				-0.2
4,510,082	-				+0.5
4,510,152	-		PP_4001	0.16	+0.2
4,510,158	-		PP_4001	0.18	+0.2
4,510,158	-		PP_4001	0.18	+0.6
4,510,158	-		PP_4001	0.18	-1.5
4,510,160	-		PP_4001	0.18	-0.5
4,510,364	-		PP_4001	0.73	-0.4
4,510,364	-		PP_4001	0.73	+0.2
4,510,404	-		PP_4001	0.83	+0.2
4,510,422	-		PP_4001	0.88	-0.3
4,510,422	-		PP_4001	0.88	-0.5
4,510,422	-		PP_4001	0.88	-1.3
4,510,422	-		PP_4001	0.88	-1.1
4,510,563	+				+1.9
4,510,564	-				-0.0
4,510,564	-				-1.8
4,510,564	-				+1.3
4,510,566	+				+1.9
4,510,567	-				+0.8
4,510,567	-				+1.3
4,510,597	-		PP_4002	0.10	+0.1
4,510,597	-		PP_4002	0.10	+1.6
4,510,597	-		PP_4002	0.10	+0.3
4,510,597	-		PP_4002	0.10	-1.2
4,510,615	-		PP_4002	0.11	-1.0
4,510,639	-		PP_4002	0.13	-0.7
4,510,639	-		PP_4002	0.13	-1.4
4,510,761	+		PP_4002	0.22	+2.9
4,510,761	+		PP_4002	0.22	+0.8
4,510,762	-		PP_4002	0.23	+0.1
4,510,762	-		PP_4002	0.23	+1.2
4,510,794	+		PP_4002	0.25	-0.5
4,510,876	+		PP_4002	0.31	-1.0
4,510,941	+		PP_4002	0.36	+0.2
4,511,033	+		PP_4002	0.43	+0.9
4,511,033	+		PP_4002	0.43	+0.1
4,511,099	+		PP_4002	0.48	+0.6
4,511,099	+		PP_4002	0.48	-0.4
4,511,099	+		PP_4002	0.48	-0.1
4,511,099	+		PP_4002	0.48	-0.8
4,511,100	-		PP_4002	0.48	-1.8
4,511,100	-		PP_4002	0.48	+0.7
4,511,316	+		PP_4002	0.64	-1.7
4,511,316	+		PP_4002	0.64	-0.5
4,511,317	-		PP_4002	0.64	-0.9
4,511,317	-		PP_4002	0.64	-1.2
4,511,317	-		PP_4002	0.64	+0.3
4,511,317	-		PP_4002	0.64	+0.2
4,511,317	-		PP_4002	0.64	-0.1
4,511,317	-		PP_4002	0.64	-1.3
4,511,317	-		PP_4002	0.64	-1.2
4,511,410	-		PP_4002	0.71	+0.3
4,511,484	+		PP_4002	0.77	+1.0
4,511,484	+		PP_4002	0.77	-1.4
4,511,715	+				+0.6
4,511,716	-				+1.4
4,511,716	-				-0.8
4,511,803	-				-0.2