Strain Fitness in Pseudomonas putida KT2440 around PP_3983

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,491,211	+		PP_3982	0.75	-0.5
4,491,211	+		PP_3982	0.75	+0.6
4,491,212	-		PP_3982	0.75	+0.9
4,491,237	+		PP_3982	0.76	-0.2
4,491,322	+		PP_3982	0.80	+0.4
4,491,335	+		PP_3982	0.80	-0.4
4,491,336	-		PP_3982	0.80	+1.0
4,491,336	-		PP_3982	0.80	+1.6
4,491,336	-		PP_3982	0.80	-0.6
4,491,410	+		PP_3982	0.83	+0.2
4,491,410	+		PP_3982	0.83	-2.2
4,491,411	-		PP_3982	0.83	-1.2
4,491,411	-		PP_3982	0.83	+0.4
4,491,422	-		PP_3982	0.83	+0.1
4,491,437	+		PP_3982	0.84	-0.4
4,491,526	+		PP_3982	0.87	-1.2
4,491,526	+		PP_3982	0.87	+0.9
4,491,526	+		PP_3982	0.87	+0.0
4,491,526	+		PP_3982	0.87	+0.9
4,491,526	+		PP_3982	0.87	-0.9
4,491,527	-		PP_3982	0.87	-1.6
4,491,527	-		PP_3982	0.87	+0.7
4,491,527	-		PP_3982	0.87	-0.6
4,491,527	-		PP_3982	0.87	-0.2
4,491,669	-				-0.7
4,491,737	+				+0.1
4,491,737	+				+0.6
4,491,737	+				-0.1
4,491,738	-				-0.5
4,491,738	-				-0.6
4,491,738	-				+0.3
4,491,828	+				+1.5
4,491,829	-				-0.9
4,491,841	+				-0.3
4,491,841	+				+1.0
4,491,842	-				+0.5
4,491,842	-				+0.9
4,491,897	+				+1.9
4,491,897	+				-1.0
4,491,898	-				-2.2
4,491,898	-				+0.0
4,491,898	-				-0.7
4,491,916	+				+1.3
4,491,920	+				+1.3
4,491,920	+				-0.1
4,491,920	+				-0.4
4,491,920	+				+0.6
4,491,921	-				+0.1
4,491,921	-				-0.4
4,491,921	-				+1.6
4,491,964	-				+0.5
4,491,964	-				+0.4
4,491,983	-				+0.2
4,492,028	+				-1.2
4,492,028	+				-1.7
4,492,029	-				-2.7
4,492,029	-				+0.5
4,492,029	-				+1.0
4,492,067	+				-1.3
4,492,067	+				-0.3
4,492,068	-				-0.1
4,492,068	-				+1.1
4,492,068	-				-2.3
4,492,071	+				-1.0
4,492,071	+				+1.2
4,492,071	+				+0.1
4,492,071	+				-2.3
4,492,071	+				-1.0
4,492,071	+				+1.0
4,492,072	-				-2.1
4,492,072	-				-0.5
4,492,072	-				-0.4
4,492,072	-				+0.2
4,492,072	-				-0.1
4,492,072	-				-0.9
4,492,072	-				-0.5
4,492,072	-				-0.3
4,492,072	-				-0.7
4,492,073	+				+0.6
4,492,073	+				-1.1
4,492,073	+				-2.1
4,492,073	+				-1.2
4,492,073	+				+1.0
4,492,074	-				+1.6
4,492,074	-				-1.2
4,492,074	-				-0.3
4,492,074	-				-1.0
4,492,074	-				-2.0
4,492,074	-				-0.0
4,492,074	-				+2.4
4,492,097	+				+0.4
4,492,098	-				+2.1
4,492,098	-				-2.0
4,492,129	+				+1.1
4,492,130	-				-0.8
4,492,138	+				-0.4
4,492,138	+				-0.2
4,492,139	-				+0.4
4,492,184	-				-0.4
4,492,184	-				-0.3
4,492,184	-				+0.3
4,492,264	+		PP_3983	0.19	+0.6
4,492,264	+		PP_3983	0.19	-0.0
4,492,264	+		PP_3983	0.19	+0.2
4,492,265	-		PP_3983	0.19	+0.5
4,492,265	-		PP_3983	0.19	-0.6
4,492,265	-		PP_3983	0.19	-0.1
4,492,265	-		PP_3983	0.19	-0.7
4,492,268	+		PP_3983	0.19	-0.4
4,492,268	+		PP_3983	0.19	+1.1
4,492,268	+		PP_3983	0.19	+1.2
4,492,331	+		PP_3983	0.27	+0.9
4,492,356	+		PP_3983	0.30	-0.8
4,492,362	+		PP_3983	0.31	+1.9
4,492,362	+		PP_3983	0.31	-0.9
4,492,362	+		PP_3983	0.31	+1.1
4,492,362	+		PP_3983	0.31	-3.3
4,492,362	+		PP_3983	0.31	-0.3
4,492,362	+		PP_3983	0.31	+0.9
4,492,363	-		PP_3983	0.31	+0.8
4,492,363	-		PP_3983	0.31	+0.8
4,492,363	-		PP_3983	0.31	+0.2
4,492,363	-		PP_3983	0.31	+1.7
4,492,382	-		PP_3983	0.34	+0.7
4,492,509	+		PP_3983	0.50	+0.4
4,492,510	-		PP_3983	0.50	+0.1
4,492,606	+		PP_3983	0.62	+0.1
4,492,606	+		PP_3983	0.62	+0.8
4,492,606	+		PP_3983	0.62	+1.5
4,492,606	+		PP_3983	0.62	-1.4
4,492,607	-		PP_3983	0.62	+1.4
4,492,640	+		PP_3983	0.67	+0.4
4,492,641	-		PP_3983	0.67	+1.3
4,492,659	+		PP_3983	0.69	+1.1
4,492,660	-		PP_3983	0.69	+0.8
4,492,817	+		PP_3983	0.89	+2.9
4,492,818	-		PP_3983	0.89	+1.1
4,492,932	-				-1.0
4,492,989	+				-0.4
4,493,029	+				+0.3
4,493,030	-				+0.5
4,493,030	-				+3.1
4,493,030	-				-0.6
4,493,043	+				-1.0
4,493,048	+				+0.6
4,493,049	-				+0.8
4,493,049	-				+0.6
4,493,049	-				+0.6
4,493,053	+				+1.8
4,493,053	+				+0.6
4,493,054	-				-0.3
4,493,076	-				+0.2
4,493,076	-				-0.4
4,493,208	+				+0.8
4,493,208	+				+0.5
4,493,209	-				+1.0
4,493,249	-				+0.2
4,493,361	-				-1.6
4,493,361	-				+1.0