Strain Fitness in Pseudomonas putida KT2440 around PP_3948

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,449,441	+				+1.5
4,449,680	-				+0.6
4,449,680	-				+0.5
4,449,689	+				+0.1
4,449,690	-				-0.2
4,449,701	+				-1.3
4,449,800	+				-1.1
4,449,800	+				+1.1
4,449,801	-				-1.1
4,449,801	-				-0.5
4,449,801	-				+0.3
4,449,801	-				-0.1
4,449,801	-				-0.5
4,449,801	-				+2.9
4,449,801	-				+0.6
4,449,801	-				-0.1
4,449,801	-				-0.8
4,449,851	+				+0.8
4,449,858	+				-2.1
4,449,858	+				+0.9
4,449,858	+				-1.6
4,449,858	+				-0.1
4,449,859	-				-0.5
4,449,859	-				-0.7
4,449,925	+				+0.2
4,449,926	-				+1.7
4,449,926	-				-1.5
4,449,926	-				+1.7
4,449,926	-				+0.6
4,450,073	+		PP_3947	0.31	-1.3
4,450,073	+		PP_3947	0.31	-1.7
4,450,074	-		PP_3947	0.31	+1.1
4,450,074	-		PP_3947	0.31	+1.2
4,450,142	+		PP_3947	0.45	+2.2
4,450,142	+		PP_3947	0.45	-2.1
4,450,143	-		PP_3947	0.46	-2.3
4,450,231	-		PP_3947	0.64	+0.6
4,450,231	-		PP_3947	0.64	-1.3
4,450,231	-		PP_3947	0.64	+1.9
4,450,513	+				-1.0
4,450,513	+				-2.8
4,450,513	+				-1.9
4,450,513	+				+0.6
4,450,514	-				-0.8
4,450,571	+				-0.8
4,450,572	-				-2.4
4,450,613	-				+0.3
4,450,613	-				-1.1
4,450,782	-		PP_3948	0.11	+0.8
4,450,782	-		PP_3948	0.11	-0.2
4,450,782	-		PP_3948	0.11	+2.2
4,450,956	-		PP_3948	0.16	+1.1
4,450,986	+		PP_3948	0.17	+0.7
4,450,986	+		PP_3948	0.17	+0.4
4,450,986	+		PP_3948	0.17	-0.3
4,451,021	+		PP_3948	0.18	+1.7
4,451,021	+		PP_3948	0.18	+2.6
4,451,022	-		PP_3948	0.18	+0.5
4,451,022	-		PP_3948	0.18	-1.1
4,451,079	-		PP_3948	0.19	-0.1
4,451,284	+		PP_3948	0.25	-0.9
4,451,285	-		PP_3948	0.25	+0.6
4,451,396	+		PP_3948	0.28	-0.2
4,451,397	-		PP_3948	0.28	-0.8
4,451,408	+		PP_3948	0.28	-0.1
4,451,486	-		PP_3948	0.31	-0.6
4,451,582	+		PP_3948	0.33	-1.3
4,451,583	-		PP_3948	0.33	-1.1
4,451,778	-		PP_3948	0.39	-1.2
4,451,885	+		PP_3948	0.42	-2.1
4,451,886	-		PP_3948	0.42	-0.7
4,451,987	+		PP_3948	0.45	-1.1
4,451,988	-		PP_3948	0.45	-1.0
4,451,988	-		PP_3948	0.45	+0.1
4,451,988	-		PP_3948	0.45	+1.6
4,452,171	-		PP_3948	0.50	-1.1
4,452,181	+		PP_3948	0.50	+0.2
4,452,181	+		PP_3948	0.50	-0.1
4,452,182	-		PP_3948	0.50	+1.1
4,452,182	-		PP_3948	0.50	+0.8
4,452,862	+		PP_3948	0.69	-2.0
4,452,907	+		PP_3948	0.70	-0.2
4,452,907	+		PP_3948	0.70	+1.3
4,452,907	+		PP_3948	0.70	-0.4
4,452,926	+		PP_3948	0.71	-1.1
4,452,926	+		PP_3948	0.71	+1.0
4,452,926	+		PP_3948	0.71	+0.4
4,452,926	+		PP_3948	0.71	-0.2
4,452,927	-		PP_3948	0.71	-2.3
4,452,927	-		PP_3948	0.71	-1.1
4,452,938	-		PP_3948	0.71	-2.6
4,452,938	-		PP_3948	0.71	+0.8
4,453,009	+		PP_3948	0.73	+0.4
4,453,010	-		PP_3948	0.73	-1.9
4,453,010	-		PP_3948	0.73	+0.2
4,453,010	-		PP_3948	0.73	-0.5
4,453,049	+		PP_3948	0.74	+0.4
4,453,049	+		PP_3948	0.74	-2.0
4,453,094	+		PP_3948	0.76	-2.3
4,453,094	+		PP_3948	0.76	-1.1
4,453,094	+		PP_3948	0.76	-0.1
4,453,094	+		PP_3948	0.76	-0.7
4,453,095	-		PP_3948	0.76	-1.6
4,453,095	-		PP_3948	0.76	+0.8
4,453,100	+		PP_3948	0.76	-0.9
4,453,262	+		PP_3948	0.80	-0.7
4,453,263	-		PP_3948	0.80	-0.5
4,453,343	+		PP_3948	0.83	-0.8
4,453,343	+		PP_3948	0.83	-0.5
4,453,343	+		PP_3948	0.83	+0.5
4,453,344	-		PP_3948	0.83	+0.8
4,453,439	+		PP_3948	0.85	-2.2
4,453,439	+		PP_3948	0.85	-0.1
4,453,440	-		PP_3948	0.85	+1.1
4,453,811	+				+1.5
4,453,811	+				+0.4
4,453,868	+				+2.4
4,454,081	-		PP_3949	0.18	-0.4
4,454,082	+		PP_3949	0.18	-0.3
4,454,082	+		PP_3949	0.18	+0.2
4,454,082	+		PP_3949	0.18	+0.1
4,454,083	-		PP_3949	0.19	+0.1
4,454,083	-		PP_3949	0.19	+1.9
4,454,083	-		PP_3949	0.19	+0.3
4,454,083	-		PP_3949	0.19	-1.0
4,454,088	+		PP_3949	0.19	+0.2
4,454,112	+		PP_3949	0.23	+0.8
4,454,131	+		PP_3949	0.26	-1.5
4,454,131	+				+0.9
4,454,132	-		PP_3949	0.26	-0.5
4,454,132	-		PP_3949	0.26	+2.0
4,454,295	+		PP_3949	0.52	+1.6
4,454,295	+		PP_3949	0.52	+0.6
4,454,295	+		PP_3949	0.52	+1.4
4,454,295	+		PP_3949	0.52	+2.1
4,454,295	+		PP_3949	0.52	-0.7
4,454,295	+		PP_3949	0.52	+0.3
4,454,298	+		PP_3949	0.52	-0.4
4,454,298	+		PP_3949	0.52	+1.4
4,454,298	+		PP_3949	0.52	-0.6
4,454,298	+		PP_3949	0.52	+0.4
4,454,299	-		PP_3949	0.52	+0.9
4,454,299	-		PP_3949	0.52	-0.4
4,454,299	-		PP_3949	0.52	-0.1
4,454,391	+		PP_3949	0.67	-0.2
4,454,391	+		PP_3949	0.67	+1.4
4,454,391	+		PP_3949	0.67	-0.8
4,454,392	-		PP_3949	0.67	-0.5
4,454,392	-		PP_3949	0.67	+0.1
4,454,392	-		PP_3949	0.67	+0.1
4,454,392	-		PP_3949	0.67	-0.8
4,454,392	-		PP_3949	0.67	-1.5
4,454,392	-		PP_3949	0.67	-1.0
4,454,392	-		PP_3949	0.67	-1.5
4,454,392	-		PP_3949	0.67	+0.1
4,454,392	-		PP_3949	0.67	+0.2
4,454,392	-		PP_3949	0.67	+0.7
4,454,392	-		PP_3949	0.67	-1.2
4,454,442	+		PP_3949	0.75	-0.3
4,454,443	-		PP_3949	0.75	+1.2
4,454,443	-		PP_3949	0.75	-1.4
4,454,445	+		PP_3949	0.75	-0.1
4,454,445	+		PP_3949	0.75	+0.7
4,454,445	+		PP_3949	0.75	-1.3
4,454,445	+		PP_3949	0.75	+1.0
4,454,445	+		PP_3949	0.75	+0.7
4,454,445	+		PP_3949	0.75	-1.3
4,454,445	+		PP_3949	0.75	-2.1
4,454,445	+		PP_3949	0.75	+0.1
4,454,446	-		PP_3949	0.75	+0.4
4,454,446	-		PP_3949	0.75	-1.0
4,454,446	-		PP_3949	0.75	-1.2
4,454,446	-		PP_3949	0.75	-0.7
4,454,446	-		PP_3949	0.75	-0.7
4,454,446	-		PP_3949	0.75	+0.5
4,454,446	-		PP_3949	0.75	+0.4
4,454,446	-		PP_3949	0.75	+0.5
4,454,545	+				-0.1
4,454,545	+				-0.3
4,454,546	-				-1.9
4,454,546	-				+0.1
4,454,546	-				+0.9
4,454,755	+				-0.2
4,454,756	-				+0.5