Strain Fitness in Pseudomonas putida KT2440 around PP_3947

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,448,943	+				+0.9
4,448,944	-				+1.2
4,448,944	-				-0.1
4,448,945	+				+2.8
4,448,945	+				-0.2
4,448,945	+				-0.7
4,448,946	-				-1.3
4,448,946	-				+2.0
4,448,946	-				+1.2
4,448,946	-				-0.4
4,448,946	-				-0.3
4,448,946	-				+1.3
4,449,008	+				-1.1
4,449,008	+				+0.1
4,449,009	-				+0.6
4,449,009	-				+1.1
4,449,009	-				+0.3
4,449,009	-				-1.1
4,449,150	-		PP_3946	0.30	-0.9
4,449,150	-		PP_3946	0.30	-1.8
4,449,441	+				+1.5
4,449,680	-				+0.6
4,449,680	-				+0.5
4,449,689	+				+0.1
4,449,690	-				-0.2
4,449,701	+				-1.3
4,449,800	+				-1.1
4,449,800	+				+1.1
4,449,801	-				-1.1
4,449,801	-				-0.5
4,449,801	-				+0.3
4,449,801	-				-0.1
4,449,801	-				-0.5
4,449,801	-				+2.9
4,449,801	-				+0.6
4,449,801	-				-0.1
4,449,801	-				-0.8
4,449,851	+				+0.8
4,449,858	+				-2.1
4,449,858	+				+0.9
4,449,858	+				-1.6
4,449,858	+				-0.1
4,449,859	-				-0.5
4,449,859	-				-0.7
4,449,925	+				+0.2
4,449,926	-				+1.7
4,449,926	-				-1.5
4,449,926	-				+1.7
4,449,926	-				+0.6
4,450,073	+		PP_3947	0.31	-1.3
4,450,073	+		PP_3947	0.31	-1.7
4,450,074	-		PP_3947	0.31	+1.1
4,450,074	-		PP_3947	0.31	+1.2
4,450,142	+		PP_3947	0.45	+2.2
4,450,142	+		PP_3947	0.45	-2.1
4,450,143	-		PP_3947	0.46	-2.3
4,450,231	-		PP_3947	0.64	+0.6
4,450,231	-		PP_3947	0.64	-1.3
4,450,231	-		PP_3947	0.64	+1.9
4,450,513	+				-1.0
4,450,513	+				-2.8
4,450,513	+				-1.9
4,450,513	+				+0.6
4,450,514	-				-0.8
4,450,571	+				-0.8
4,450,572	-				-2.4
4,450,613	-				+0.3
4,450,613	-				-1.1
4,450,782	-		PP_3948	0.11	+0.8
4,450,782	-		PP_3948	0.11	-0.2
4,450,782	-		PP_3948	0.11	+2.2
4,450,956	-		PP_3948	0.16	+1.1
4,450,986	+		PP_3948	0.17	+0.7
4,450,986	+		PP_3948	0.17	+0.4
4,450,986	+		PP_3948	0.17	-0.3
4,451,021	+		PP_3948	0.18	+1.7
4,451,021	+		PP_3948	0.18	+2.6
4,451,022	-		PP_3948	0.18	+0.5
4,451,022	-		PP_3948	0.18	-1.1
4,451,079	-		PP_3948	0.19	-0.1
4,451,284	+		PP_3948	0.25	-0.9
4,451,285	-		PP_3948	0.25	+0.6
4,451,396	+		PP_3948	0.28	-0.2
4,451,397	-		PP_3948	0.28	-0.8