Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3890 and PP_3891 are separated by 148 nucleotides PP_3891 and PP_3892 overlap by 19 nucleotides PP_3892 and PP_3893 overlap by 1 nucleotides PP_3893 and PP_3894 overlap by 4 nucleotides
PP_3890: PP_3890 - conserved protein of unknown function, at 4,407,840 to 4,408,283
_3890
PP_3891: PP_3891 - conserved protein of unknown function, at 4,408,432 to 4,408,728
_3891
PP_3892: PP_3892 - conserved protein of unknown function, at 4,408,710 to 4,408,916
_3892
PP_3893: PP_3893 - putative Phage DNA helicase, at 4,408,916 to 4,410,313
_3893
PP_3894: PP_3894 - putative Phage replication protein O, at 4,410,310 to 4,411,140
_3894
Position (kb)
4408
4409
4410
4411 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4407.925 kb on + strand, within PP_3890 at 4407.926 kb on - strand, within PP_3890 at 4407.953 kb on - strand, within PP_3890 at 4407.953 kb on - strand, within PP_3890 at 4408.012 kb on + strand, within PP_3890 at 4408.012 kb on + strand, within PP_3890 at 4408.013 kb on - strand, within PP_3890 at 4408.013 kb on - strand, within PP_3890 at 4408.013 kb on - strand, within PP_3890 at 4408.013 kb on - strand, within PP_3890 at 4408.024 kb on + strand, within PP_3890 at 4408.024 kb on + strand, within PP_3890 at 4408.025 kb on - strand, within PP_3890 at 4408.135 kb on + strand, within PP_3890 at 4408.135 kb on + strand, within PP_3890 at 4408.136 kb on - strand, within PP_3890 at 4408.136 kb on - strand, within PP_3890 at 4408.147 kb on + strand, within PP_3890 at 4408.148 kb on - strand, within PP_3890 at 4408.148 kb on - strand, within PP_3890 at 4408.268 kb on + strand at 4408.269 kb on - strand at 4408.269 kb on - strand at 4408.303 kb on + strand at 4408.303 kb on + strand at 4408.303 kb on + strand at 4408.304 kb on - strand at 4408.423 kb on + strand at 4408.424 kb on - strand at 4408.429 kb on + strand at 4408.429 kb on + strand at 4408.430 kb on - strand at 4408.430 kb on - strand at 4408.519 kb on + strand, within PP_3891 at 4408.625 kb on + strand, within PP_3891 at 4408.625 kb on + strand, within PP_3891 at 4408.625 kb on + strand, within PP_3891 at 4408.888 kb on + strand, within PP_3892 at 4409.306 kb on - strand, within PP_3893 at 4409.306 kb on - strand, within PP_3893 at 4409.370 kb on + strand, within PP_3893 at 4409.370 kb on + strand, within PP_3893 at 4409.370 kb on + strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.468 kb on + strand, within PP_3893 at 4409.468 kb on + strand, within PP_3893 at 4409.468 kb on + strand, within PP_3893 at 4409.468 kb on + strand, within PP_3893 at 4409.469 kb on - strand, within PP_3893 at 4409.469 kb on - strand, within PP_3893 at 4409.564 kb on - strand, within PP_3893 at 4409.662 kb on - strand, within PP_3893 at 4409.791 kb on + strand, within PP_3893 at 4409.930 kb on - strand, within PP_3893 at 4410.018 kb on + strand, within PP_3893 at 4410.019 kb on - strand, within PP_3893 at 4410.401 kb on + strand, within PP_3894 at 4410.402 kb on - strand, within PP_3894 at 4410.402 kb on - strand, within PP_3894 at 4410.431 kb on + strand, within PP_3894 at 4410.432 kb on - strand, within PP_3894 at 4410.588 kb on - strand, within PP_3894 at 4410.588 kb on - strand, within PP_3894 at 4410.714 kb on + strand, within PP_3894 at 4410.715 kb on - strand, within PP_3894 at 4410.715 kb on - strand, within PP_3894 at 4410.720 kb on + strand, within PP_3894 at 4410.721 kb on - strand, within PP_3894 at 4410.721 kb on - strand, within PP_3894 at 4410.733 kb on + strand, within PP_3894 at 4410.734 kb on - strand, within PP_3894 at 4410.734 kb on - strand, within PP_3894 at 4410.734 kb on - strand, within PP_3894 at 4410.734 kb on - strand, within PP_3894 at 4410.772 kb on + strand, within PP_3894 at 4410.773 kb on - strand, within PP_3894 at 4410.784 kb on - strand, within PP_3894 at 4410.950 kb on + strand, within PP_3894 at 4410.968 kb on + strand, within PP_3894 at 4410.968 kb on + strand, within PP_3894 at 4410.968 kb on + strand, within PP_3894 at 4410.969 kb on - strand, within PP_3894 at 4410.969 kb on - strand, within PP_3894 at 4411.002 kb on - strand, within PP_3894 at 4411.079 kb on + strand at 4411.079 kb on + strand at 4411.079 kb on + strand at 4411.079 kb on + strand at 4411.079 kb on + strand at 4411.080 kb on - strand at 4411.080 kb on - strand at 4411.080 kb on - strand at 4411.080 kb on - strand at 4411.096 kb on - strand at 4411.096 kb on - strand at 4411.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 4,407,925 + PP_3890 0.19 +0.2 4,407,926 - PP_3890 0.19 +2.6 4,407,953 - PP_3890 0.25 -0.5 4,407,953 - PP_3890 0.25 -1.2 4,408,012 + PP_3890 0.39 -1.8 4,408,012 + PP_3890 0.39 +0.1 4,408,013 - PP_3890 0.39 +0.6 4,408,013 - PP_3890 0.39 -0.6 4,408,013 - PP_3890 0.39 -0.0 4,408,013 - PP_3890 0.39 +1.3 4,408,024 + PP_3890 0.41 -1.6 4,408,024 + PP_3890 0.41 -0.0 4,408,025 - PP_3890 0.42 -2.5 4,408,135 + PP_3890 0.66 +0.6 4,408,135 + PP_3890 0.66 +0.2 4,408,136 - PP_3890 0.67 -0.7 4,408,136 - PP_3890 0.67 -1.3 4,408,147 + PP_3890 0.69 +0.6 4,408,148 - PP_3890 0.69 -1.5 4,408,148 - PP_3890 0.69 -0.0 4,408,268 + -1.8 4,408,269 - +4.4 4,408,269 - -1.2 4,408,303 + -0.4 4,408,303 + -2.4 4,408,303 + -0.0 4,408,304 - -0.9 4,408,423 + +0.1 4,408,424 - -0.3 4,408,429 + -2.2 4,408,429 + -1.3 4,408,430 - -0.6 4,408,430 - -0.3 4,408,519 + PP_3891 0.29 +2.3 4,408,625 + PP_3891 0.65 -1.6 4,408,625 + PP_3891 0.65 +0.5 4,408,625 + PP_3891 0.65 +1.0 4,408,888 + PP_3892 0.86 +0.2 4,409,306 - PP_3893 0.28 -0.2 4,409,306 - PP_3893 0.28 +0.5 4,409,370 + PP_3893 0.32 +0.4 4,409,370 + PP_3893 0.32 +1.5 4,409,370 + PP_3893 0.32 +1.1 4,409,371 - PP_3893 0.33 -1.0 4,409,371 - PP_3893 0.33 +1.2 4,409,371 - PP_3893 0.33 +1.4 4,409,371 - PP_3893 0.33 +0.2 4,409,371 - PP_3893 0.33 +0.2 4,409,468 + PP_3893 0.39 +1.9 4,409,468 + PP_3893 0.39 +1.0 4,409,468 + PP_3893 0.39 +0.2 4,409,468 + PP_3893 0.39 +0.4 4,409,469 - PP_3893 0.40 -1.6 4,409,469 - PP_3893 0.40 -1.9 4,409,564 - PP_3893 0.46 +0.7 4,409,662 - PP_3893 0.53 -1.3 4,409,791 + PP_3893 0.63 +1.8 4,409,930 - PP_3893 0.73 +1.2 4,410,018 + PP_3893 0.79 -1.3 4,410,019 - PP_3893 0.79 +0.5 4,410,401 + PP_3894 0.11 +0.9 4,410,402 - PP_3894 0.11 +0.3 4,410,402 - PP_3894 0.11 +0.2 4,410,431 + PP_3894 0.15 -0.1 4,410,432 - PP_3894 0.15 +0.6 4,410,588 - PP_3894 0.33 -1.1 4,410,588 - PP_3894 0.33 -0.5 4,410,714 + PP_3894 0.49 +0.0 4,410,715 - PP_3894 0.49 -1.4 4,410,715 - PP_3894 0.49 -0.1 4,410,720 + PP_3894 0.49 +0.6 4,410,721 - PP_3894 0.49 -0.1 4,410,721 - PP_3894 0.49 +0.4 4,410,733 + PP_3894 0.51 +0.6 4,410,734 - PP_3894 0.51 +1.1 4,410,734 - PP_3894 0.51 -0.9 4,410,734 - PP_3894 0.51 +1.4 4,410,734 - PP_3894 0.51 -1.8 4,410,772 + PP_3894 0.56 +0.9 4,410,773 - PP_3894 0.56 -0.3 4,410,784 - PP_3894 0.57 +0.5 4,410,950 + PP_3894 0.77 -1.6 4,410,968 + PP_3894 0.79 -0.7 4,410,968 + PP_3894 0.79 -0.1 4,410,968 + PP_3894 0.79 +0.2 4,410,969 - PP_3894 0.79 -0.4 4,410,969 - PP_3894 0.79 +1.0 4,411,002 - PP_3894 0.83 -1.1 4,411,079 + -0.3 4,411,079 + -2.1 4,411,079 + -1.1 4,411,079 + -0.5 4,411,079 + -1.3 4,411,080 - +1.3 4,411,080 - +1.2 4,411,080 - +0.1 4,411,080 - +0.6 4,411,096 - -0.8 4,411,096 - -0.2 4,411,217 - +0.1
Or see this region's nucleotide sequence