Strain Fitness in Pseudomonas putida KT2440 around PP_3891

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,407,445	+		PP_3889	0.69	-0.3
4,407,446	-		PP_3889	0.69	-1.2
4,407,492	+		PP_3889	0.73	-0.2
4,407,492	+		PP_3889	0.73	+2.0
4,407,492	+		PP_3889	0.73	+0.3
4,407,493	-		PP_3889	0.73	+1.1
4,407,493	-		PP_3889	0.73	-1.4
4,407,493	-		PP_3889	0.73	-0.8
4,407,536	+		PP_3889	0.76	+0.1
4,407,536	+		PP_3889	0.76	+0.0
4,407,536	+				+1.4
4,407,537	-		PP_3889	0.76	+0.0
4,407,740	+				+0.9
4,407,741	-				-1.5
4,407,871	+				-0.6
4,407,872	-				-1.0
4,407,872	-				-0.2
4,407,925	+		PP_3890	0.19	+0.2
4,407,926	-		PP_3890	0.19	+2.6
4,407,953	-		PP_3890	0.25	-0.5
4,407,953	-		PP_3890	0.25	-1.2
4,408,012	+		PP_3890	0.39	-1.8
4,408,012	+		PP_3890	0.39	+0.1
4,408,013	-		PP_3890	0.39	+0.6
4,408,013	-		PP_3890	0.39	-0.6
4,408,013	-		PP_3890	0.39	-0.0
4,408,013	-		PP_3890	0.39	+1.3
4,408,024	+		PP_3890	0.41	-1.6
4,408,024	+		PP_3890	0.41	-0.0
4,408,025	-		PP_3890	0.42	-2.5
4,408,135	+		PP_3890	0.66	+0.6
4,408,135	+		PP_3890	0.66	+0.2
4,408,136	-		PP_3890	0.67	-0.7
4,408,136	-		PP_3890	0.67	-1.3
4,408,147	+		PP_3890	0.69	+0.6
4,408,148	-		PP_3890	0.69	-1.5
4,408,148	-		PP_3890	0.69	-0.0
4,408,268	+				-1.8
4,408,269	-				+4.4
4,408,269	-				-1.2
4,408,303	+				-0.4
4,408,303	+				-2.4
4,408,303	+				-0.0
4,408,304	-				-0.9
4,408,423	+				+0.1
4,408,424	-				-0.3
4,408,429	+				-2.2
4,408,429	+				-1.3
4,408,430	-				-0.6
4,408,430	-				-0.3
4,408,519	+		PP_3891	0.29	+2.3
4,408,625	+		PP_3891	0.65	-1.6
4,408,625	+		PP_3891	0.65	+0.5
4,408,625	+		PP_3891	0.65	+1.0
4,408,888	+		PP_3892	0.86	+0.2
4,409,306	-		PP_3893	0.28	-0.2
4,409,306	-		PP_3893	0.28	+0.5
4,409,370	+		PP_3893	0.32	+0.4
4,409,370	+		PP_3893	0.32	+1.5
4,409,370	+		PP_3893	0.32	+1.1
4,409,371	-		PP_3893	0.33	-1.0
4,409,371	-		PP_3893	0.33	+1.2
4,409,371	-		PP_3893	0.33	+1.4
4,409,371	-		PP_3893	0.33	+0.2
4,409,371	-		PP_3893	0.33	+0.2
4,409,468	+		PP_3893	0.39	+1.9
4,409,468	+		PP_3893	0.39	+1.0
4,409,468	+		PP_3893	0.39	+0.2
4,409,468	+		PP_3893	0.39	+0.4
4,409,469	-		PP_3893	0.40	-1.6
4,409,469	-		PP_3893	0.40	-1.9
4,409,564	-		PP_3893	0.46	+0.7
4,409,662	-		PP_3893	0.53	-1.3