Strain Fitness in Pseudomonas putida KT2440 around PP_3847

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,369,327	-				+0.1
4,369,456	+		PP_3846	0.10	-0.0
4,369,456	+		PP_3846	0.10	+1.1
4,369,457	-		PP_3846	0.11	+0.4
4,369,492	-		PP_3846	0.15	-2.4
4,369,698	-		PP_3846	0.40	+1.9
4,369,707	+		PP_3846	0.41	+0.6
4,369,707	+		PP_3846	0.41	-1.6
4,369,708	-		PP_3846	0.41	+0.3
4,369,708	-		PP_3846	0.41	-0.7
4,369,708	-		PP_3846	0.41	-2.9
4,369,765	+		PP_3846	0.48	+0.2
4,369,766	-		PP_3846	0.48	-2.0
4,369,766	-		PP_3846	0.48	+0.3
4,369,813	+		PP_3846	0.54	-2.0
4,369,813	+		PP_3846	0.54	+0.4
4,369,814	-		PP_3846	0.54	-0.7
4,369,916	-		PP_3846	0.67	-1.6
4,369,916	-		PP_3846	0.67	+0.8
4,369,916	-		PP_3846	0.67	+0.8
4,369,974	+		PP_3846	0.74	-2.3
4,369,974	+		PP_3846	0.74	-0.6
4,370,105	+				+0.3
4,370,123	+				+0.6
4,370,123	+				+0.9
4,370,123	+				-0.2
4,370,124	-				+0.6
4,370,136	-				+0.7
4,370,137	+				-0.5
4,370,138	-				-0.0
4,370,138	-				-0.5
4,370,138	-				+0.0
4,370,170	-				+1.0
4,370,205	+				-1.5
4,370,205	+				+0.4
4,370,205	+				+0.4
4,370,205	+				-0.4
4,370,206	-				+0.1
4,370,206	-				-0.7
4,370,206	-				-0.0
4,370,206	-				-2.1
4,370,206	-				+1.3
4,370,253	+				+0.0
4,370,254	-				-0.8
4,370,257	+				+0.6
4,370,258	-				+1.1
4,370,269	+				-1.9
4,370,282	-				-0.6
4,370,285	+				-0.8
4,370,286	-				-0.5
4,370,307	-				+0.1
4,370,313	-				-1.4
4,370,327	+				-0.5
4,370,328	-				+1.2
4,370,328	-				-1.9
4,370,368	+				+0.7
4,370,390	+		PP_3847	0.10	+0.6
4,370,423	+		PP_3847	0.15	-0.4
4,370,423	+		PP_3847	0.15	-2.0
4,370,424	-		PP_3847	0.15	-1.2
4,370,424	-		PP_3847	0.15	+0.4
4,370,424	-		PP_3847	0.15	+0.4
4,370,427	+		PP_3847	0.15	+1.2
4,370,427	+		PP_3847	0.15	-0.2
4,370,427	+		PP_3847	0.15	-2.7
4,370,427	+		PP_3847	0.15	-0.5
4,370,428	-		PP_3847	0.15	-1.9
4,370,428	-		PP_3847	0.15	-0.9
4,370,428	-		PP_3847	0.15	-0.2
4,370,536	-		PP_3847	0.29	-2.2
4,370,536	-		PP_3847	0.29	-0.2
4,370,551	-		PP_3847	0.31	-0.3
4,370,551	-		PP_3847	0.31	+1.1
4,370,551	-		PP_3847	0.31	+1.2
4,370,551	-		PP_3847	0.31	-1.1
4,370,551	-		PP_3847	0.31	+0.0
4,370,653	-		PP_3847	0.43	-0.7
4,370,653	-		PP_3847	0.43	-1.3
4,370,653	-		PP_3847	0.43	+1.4
4,370,653	-		PP_3847	0.43	+0.6
4,370,653	-		PP_3847	0.43	+1.3
4,370,661	+		PP_3847	0.44	+0.9
4,370,662	-		PP_3847	0.44	+0.0
4,370,696	+		PP_3847	0.49	+0.7
4,370,696	+		PP_3847	0.49	-0.3
4,370,696	+		PP_3847	0.49	+0.7
4,370,696	+		PP_3847	0.49	-1.0
4,370,696	+		PP_3847	0.49	-0.3
4,370,696	+		PP_3847	0.49	-1.1
4,370,696	+		PP_3847	0.49	+0.1
4,370,696	+		PP_3847	0.49	+0.5
4,370,697	-		PP_3847	0.49	+1.5
4,370,697	-		PP_3847	0.49	+0.9
4,370,697	-		PP_3847	0.49	+1.7
4,370,898	-		PP_3847	0.74	-0.0
4,370,898	-		PP_3847	0.74	+1.2
4,370,898	-		PP_3847	0.74	+0.1
4,370,954	+		PP_3847	0.81	+0.9
4,370,954	+		PP_3847	0.81	+0.1
4,370,954	+		PP_3847	0.81	-1.0
4,370,954	+		PP_3847	0.81	-0.2
4,370,955	-		PP_3847	0.81	+1.7
4,371,039	+				+0.9
4,371,039	+				-0.3
4,371,039	+				+0.4
4,371,039	+				-0.7
4,371,039	+				-0.7
4,371,040	-				+0.7
4,371,040	-				-2.7
4,371,040	-				-1.1
4,371,040	-				-0.9
4,371,040	-				+0.1
4,371,229	-		PP_5636	0.47	+1.3
4,371,229	-		PP_5636	0.47	+0.8
4,371,355	+		PP_5636	0.83	-0.2
4,371,355	+		PP_5636	0.83	-0.6
4,371,355	+		PP_5636	0.83	-0.9
4,371,355	+		PP_5636	0.83	-0.1
4,371,356	-		PP_5636	0.83	+0.8
4,371,356	-		PP_5636	0.83	+0.0
4,371,372	-		PP_5636	0.88	-0.5
4,371,372	-		PP_5636	0.88	+2.0
4,371,372	-		PP_5636	0.88	+0.2
4,371,447	+				+0.9
4,371,456	+				+1.1
4,371,456	+				-0.9
4,371,456	+				-0.6
4,371,456	+				-0.8
4,371,456	+				-1.4
4,371,457	-				-0.4
4,371,457	-				-1.3
4,371,457	-				+1.0
4,371,457	-				-1.0
4,371,457	-				+1.0
4,371,464	+				+0.2
4,371,464	+				+0.2
4,371,478	+				+1.5
4,371,479	-				-0.8
4,371,583	-				-2.8
4,371,656	+				-1.9
4,371,739	-				+0.2
4,371,760	+				-0.3
4,371,761	-				+0.6
4,371,761	-				+0.4
4,371,761	-				+0.2
4,371,774	-				-0.7
4,371,942	+				+0.2
4,371,942	+				+1.0
4,371,942	+				+1.3
4,371,944	+				+1.2
4,371,945	-				+0.4
4,371,945	-				-0.8
4,371,945	-				+0.2
4,371,945	-				-0.7
4,371,945	-				-0.6
4,371,992	-				+1.2
4,371,995	+				-1.6
4,371,996	-				+1.5
4,371,996	-				-0.2
4,371,996	-				-1.9
4,372,031	-				-0.2