Strain Fitness in Pseudomonas putida KT2440 around PP_3805

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,332,578	+		PP_3804	0.44	-0.0
4,332,578	+		PP_3804	0.44	+1.2
4,332,578	+		PP_3804	0.44	-1.1
4,332,578	+		PP_3804	0.44	-0.9
4,332,578	+		PP_3804	0.44	-0.0
4,332,578	+		PP_3804	0.44	-0.5
4,332,578	+		PP_3804	0.44	-1.3
4,332,579	-		PP_3804	0.44	+0.8
4,332,579	-		PP_3804	0.44	-0.1
4,332,588	-		PP_3804	0.45	-0.8
4,332,588	-		PP_3804	0.45	-0.8
4,332,794	+		PP_3804	0.69	-0.8
4,333,017	+				-1.7
4,333,017	+				+0.5
4,333,017	+				+1.3
4,333,018	-				-0.2
4,333,166	+				-0.3
4,333,167	-				-0.2
4,333,372	-		PP_3805	0.22	-0.2
4,333,372	-		PP_3805	0.22	-0.0
4,333,554	-		PP_3805	0.39	-1.5
4,333,568	+		PP_3805	0.40	-2.0
4,333,568	+		PP_3805	0.40	-0.3
4,333,568	+		PP_3805	0.40	-1.1
4,333,569	-		PP_3805	0.40	-1.4
4,333,607	+		PP_3805	0.44	+1.3
4,333,607	+		PP_3805	0.44	-1.7
4,333,607	+		PP_3805	0.44	-2.9
4,333,607	+		PP_3805	0.44	+0.0
4,333,608	-		PP_3805	0.44	-0.2
4,333,608	-		PP_3805	0.44	+1.1
4,333,608	-		PP_3805	0.44	+0.9
4,333,661	+		PP_3805	0.49	-2.1
4,333,787	+		PP_3805	0.61	-0.6
4,333,787	+		PP_3805	0.61	+0.3
4,333,838	+		PP_3805	0.66	-1.6
4,333,838	+		PP_3805	0.66	+0.5
4,333,896	+		PP_3805	0.71	+0.4
4,333,896	+		PP_3805	0.71	-2.4
4,333,897	-		PP_3805	0.72	-1.2
4,333,897	-		PP_3805	0.72	-1.1
4,334,102	-				+0.1
4,334,245	+				-2.2
4,334,322	+		PP_3806	0.18	+0.6
4,334,322	+		PP_3806	0.18	-2.0
4,334,322	+		PP_3806	0.18	-0.9
4,334,575	-		PP_3806	0.64	+0.5
4,334,801	+				-1.1
4,335,051	+		PP_3807	0.31	+1.0
4,335,051	+		PP_3807	0.31	-1.7
4,335,051	+		PP_3807	0.31	-1.3
4,335,052	-		PP_3807	0.31	+0.2
4,335,052	-		PP_3807	0.31	-1.0