Strain Fitness in Pseudomonas putida KT2440 around PP_3802

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3800 and PP_3801 are separated by 16 nucleotidesPP_3801 and PP_3802 overlap by 4 nucleotidesPP_3802 and PP_3803 overlap by 1 nucleotidesPP_3803 and PP_3804 overlap by 4 nucleotides PP_3800: PP_3800 - conserved protein of unknown function, at 4,329,070 to 4,329,639 _3800 PP_3801: PP_3801 - putative Cation ABC transporter, periplasmic cation-binding protein, at 4,329,656 to 4,330,558 _3801 PP_3802: PP_3802 - putative Cation ABC transporter, ATP-binding protein, at 4,330,555 to 4,331,301 _3802 PP_3803: PP_3803 - putative Cation ABC transporter, permease protein, at 4,331,301 to 4,332,200 _3803 PP_3804: PP_3804 - conserved exported protein of unknown function, at 4,332,197 to 4,333,060 _3804 Position (kb) 4330 4331 4332Strain fitness (log2 ratio) -2 -1 0 1 2at 4329.604 kb on + strandat 4329.719 kb on - strandat 4329.758 kb on + strand, within PP_3801at 4329.759 kb on - strand, within PP_3801at 4329.759 kb on - strand, within PP_3801at 4329.761 kb on + strand, within PP_3801at 4329.762 kb on - strand, within PP_3801at 4329.762 kb on - strand, within PP_3801at 4329.762 kb on - strand, within PP_3801at 4329.767 kb on + strand, within PP_3801at 4329.767 kb on + strand, within PP_3801at 4329.768 kb on - strand, within PP_3801at 4329.768 kb on - strand, within PP_3801at 4329.768 kb on - strand, within PP_3801at 4329.778 kb on + strand, within PP_3801at 4329.778 kb on + strand, within PP_3801at 4329.779 kb on - strand, within PP_3801at 4329.779 kb on - strand, within PP_3801at 4329.840 kb on - strand, within PP_3801at 4330.133 kb on + strand, within PP_3801at 4330.133 kb on + strand, within PP_3801at 4330.251 kb on - strand, within PP_3801at 4330.256 kb on + strand, within PP_3801at 4330.256 kb on + strand, within PP_3801at 4330.257 kb on - strand, within PP_3801at 4330.409 kb on + strand, within PP_3801at 4330.410 kb on - strand, within PP_3801at 4330.462 kb on + strand, within PP_3801at 4330.462 kb on + strand, within PP_3801at 4330.462 kb on + strand, within PP_3801at 4330.463 kb on - strand, within PP_3801at 4330.463 kb on - strand, within PP_3801at 4330.463 kb on - strand, within PP_3801at 4330.478 kb on + strandat 4330.479 kb on - strandat 4330.493 kb on + strandat 4330.493 kb on + strandat 4330.493 kb on + strandat 4330.494 kb on - strandat 4330.494 kb on - strandat 4330.494 kb on - strandat 4330.801 kb on + strand, within PP_3802at 4330.801 kb on + strand, within PP_3802at 4330.802 kb on - strand, within PP_3802at 4331.105 kb on + strand, within PP_3802at 4331.105 kb on + strand, within PP_3802at 4331.106 kb on - strand, within PP_3802at 4331.106 kb on - strand, within PP_3802at 4331.133 kb on + strand, within PP_3802at 4331.352 kb on + strandat 4331.352 kb on + strandat 4331.353 kb on - strandat 4331.353 kb on - strandat 4331.373 kb on + strandat 4331.373 kb on + strandat 4331.374 kb on - strandat 4331.374 kb on - strandat 4331.535 kb on + strand, within PP_3803at 4331.535 kb on + strand, within PP_3803at 4331.535 kb on + strand, within PP_3803at 4331.535 kb on + strand, within PP_3803at 4331.535 kb on + strandat 4331.538 kb on - strand, within PP_3803at 4331.538 kb on - strand, within PP_3803at 4331.610 kb on - strand, within PP_3803at 4331.627 kb on + strand, within PP_3803at 4331.750 kb on + strand, within PP_3803at 4331.817 kb on + strand, within PP_3803at 4331.818 kb on - strand, within PP_3803at 4331.892 kb on + strand, within PP_3803at 4331.893 kb on - strand, within PP_3803

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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4,329,604 + -0.1
4,329,719 - -0.4
4,329,758 + PP_3801 0.11 -2.1
4,329,759 - PP_3801 0.11 -0.5
4,329,759 - PP_3801 0.11 -0.5
4,329,761 + PP_3801 0.12 +0.4
4,329,762 - PP_3801 0.12 -1.3
4,329,762 - PP_3801 0.12 -0.1
4,329,762 - PP_3801 0.12 -0.2
4,329,767 + PP_3801 0.12 -0.3
4,329,767 + PP_3801 0.12 -0.7
4,329,768 - PP_3801 0.12 -0.3
4,329,768 - PP_3801 0.12 -0.3
4,329,768 - PP_3801 0.12 -0.4
4,329,778 + PP_3801 0.14 -0.2
4,329,778 + PP_3801 0.14 -0.3
4,329,779 - PP_3801 0.14 +0.6
4,329,779 - PP_3801 0.14 -1.7
4,329,840 - PP_3801 0.20 -0.9
4,330,133 + PP_3801 0.53 -0.3
4,330,133 + PP_3801 0.53 +0.6
4,330,251 - PP_3801 0.66 +0.2
4,330,256 + PP_3801 0.66 +0.5
4,330,256 + PP_3801 0.66 -0.3
4,330,257 - PP_3801 0.67 -1.4
4,330,409 + PP_3801 0.83 -0.1
4,330,410 - PP_3801 0.83 -1.1
4,330,462 + PP_3801 0.89 -0.1
4,330,462 + PP_3801 0.89 +0.6
4,330,462 + PP_3801 0.89 -0.2
4,330,463 - PP_3801 0.89 -0.1
4,330,463 - PP_3801 0.89 -0.2
4,330,463 - PP_3801 0.89 -1.7
4,330,478 + -1.3
4,330,479 - +2.2
4,330,493 + -0.2
4,330,493 + +0.8
4,330,493 + +0.0
4,330,494 - -0.7
4,330,494 - -0.8
4,330,494 - +1.5
4,330,801 + PP_3802 0.33 -1.5
4,330,801 + PP_3802 0.33 -0.9
4,330,802 - PP_3802 0.33 +0.4
4,331,105 + PP_3802 0.74 +0.5
4,331,105 + PP_3802 0.74 -2.6
4,331,106 - PP_3802 0.74 +0.4
4,331,106 - PP_3802 0.74 -1.2
4,331,133 + PP_3802 0.77 -1.8
4,331,352 + +1.1
4,331,352 + +0.8
4,331,353 - +0.2
4,331,353 - -1.9
4,331,373 + -0.1
4,331,373 + -1.1
4,331,374 - -0.8
4,331,374 - +0.5
4,331,535 + PP_3803 0.26 -0.2
4,331,535 + PP_3803 0.26 -2.2
4,331,535 + PP_3803 0.26 -0.2
4,331,535 + PP_3803 0.26 -0.0
4,331,535 + +0.5
4,331,538 - PP_3803 0.26 -0.1
4,331,538 - PP_3803 0.26 -1.8
4,331,610 - PP_3803 0.34 +0.1
4,331,627 + PP_3803 0.36 +0.7
4,331,750 + PP_3803 0.50 +0.5
4,331,817 + PP_3803 0.57 -1.6
4,331,818 - PP_3803 0.57 -1.3
4,331,892 + PP_3803 0.66 -0.5
4,331,893 - PP_3803 0.66 +1.1

Or see this region's nucleotide sequence