Strain Fitness in Pseudomonas putida KT2440 around PP_3653

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,147,832	+		PP_3651	0.88	+0.6
4,147,832	+				+2.2
4,147,832	+		PP_3651	0.88	-0.1
4,147,832	+		PP_3651	0.88	-1.5
4,147,832	+		PP_3651	0.88	-0.2
4,147,833	-		PP_3651	0.88	+0.5
4,147,833	-		PP_3651	0.88	+0.0
4,147,833	-		PP_3651	0.88	-1.2
4,147,833	-		PP_3651	0.88	-1.0
4,147,995	-				+2.0
4,147,996	+				+0.2
4,147,996	+				+1.0
4,148,089	-				+0.4
4,148,252	+		PP_3652	0.20	-1.1
4,148,252	+		PP_3652	0.20	-1.8
4,148,253	-		PP_3652	0.20	+0.7
4,148,365	+		PP_3652	0.38	-0.0
4,148,365	+		PP_3652	0.38	-0.6
4,148,365	+		PP_3652	0.38	+0.6
4,148,366	-		PP_3652	0.38	+0.6
4,148,366	-		PP_3652	0.38	-0.9
4,148,366	-		PP_3652	0.38	-1.8
4,148,366	-		PP_3652	0.38	+1.0
4,148,366	-		PP_3652	0.38	-0.2
4,148,418	+		PP_3652	0.46	+0.3
4,148,500	+		PP_3652	0.59	+0.2
4,148,501	-		PP_3652	0.60	-0.4
4,148,501	-		PP_3652	0.60	-2.2
4,148,501	-		PP_3652	0.60	+0.0
4,148,509	+		PP_3652	0.61	+0.6
4,148,510	-		PP_3652	0.61	-0.1
4,148,596	+		PP_3652	0.75	+1.5
4,148,597	-		PP_3652	0.75	+0.1
4,148,597	-		PP_3652	0.75	-1.2
4,148,678	-		PP_3652	0.88	-0.6
4,148,678	-		PP_3652	0.88	-1.6
4,148,678	-		PP_3652	0.88	+0.2
4,148,795	+				-1.8
4,148,842	-				+0.7
4,148,861	+				-0.5
4,148,862	-				+0.7
4,148,953	+		PP_3653	0.21	-2.5
4,148,954	-		PP_3653	0.21	-1.8
4,149,069	+		PP_3653	0.40	+2.0
4,149,070	-		PP_3653	0.40	-0.6
4,149,070	-		PP_3653	0.40	-0.0
4,149,070	-		PP_3653	0.40	-2.0
4,149,070	-		PP_3653	0.40	-0.8
4,149,070	-		PP_3653	0.40	+0.6
4,149,199	+		PP_3653	0.61	-0.7
4,149,199	+		PP_3653	0.61	-0.3
4,149,199	+		PP_3653	0.61	+0.9
4,149,199	+		PP_3653	0.61	-0.8
4,149,362	-		PP_3653	0.88	-0.8
4,149,362	-		PP_3653	0.88	+0.4
4,149,432	-				-1.9
4,149,450	+				+0.5
4,149,450	+				+0.2
4,149,455	-				+0.5
4,149,696	+		PP_3654	0.32	+0.3
4,149,749	-		PP_3654	0.44	-0.8
4,149,749	-		PP_3654	0.44	-1.7
4,149,769	+		PP_3654	0.49	-1.5
4,149,906	+				+2.1
4,149,907	-		PP_3654	0.79	+0.9
4,149,907	-		PP_3654	0.79	-0.3
4,149,907	-		PP_3654	0.79	-0.4
4,149,927	-		PP_3654	0.83	+0.9
4,149,927	-		PP_3654	0.83	-2.1
4,149,927	-		PP_3654	0.83	+1.2
4,149,999	+				-0.0
4,150,000	-				-1.2
4,150,000	-				-0.8
4,150,000	-				-2.1
4,150,059	-				-0.5
4,150,059	-				-0.9
4,150,060	-				+0.3
4,150,269	+				+0.3
4,150,279	+				-1.0
4,150,279	+				+0.2
4,150,279	+				+1.7
4,150,279	+				-1.0
4,150,279	+				+0.3
4,150,279	+				-0.4
4,150,279	+				+1.0
4,150,280	-				-0.6
4,150,280	-				-0.2
4,150,280	-				+1.0
4,150,280	-				-2.7
4,150,280	-				-0.1
4,150,280	-				-0.3
4,150,280	-				+0.8
4,150,280	-				+1.4
4,150,280	-				+0.2
4,150,280	-				+0.6
4,150,283	+				-0.5
4,150,283	+				+0.6
4,150,377	+				+1.1
4,150,378	-				-0.1