Strain Fitness in Pseudomonas putida KT2440 around PP_3573

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,052,455	-				-1.2
4,052,493	+				+0.1
4,052,493	+				-1.4
4,052,493	+				-2.1
4,053,136	+				-0.6
4,053,136	+				+0.1
4,053,208	+				+0.3
4,053,215	+				-1.3
4,053,317	+				-1.7
4,053,317	+				-0.0
4,053,324	+				+0.2
4,053,325	-				-0.5
4,053,329	-				-0.8
4,053,331	+				-0.8
4,053,357	+				-0.6
4,053,530	+				-1.2
4,053,531	-				+1.9
4,053,679	+		PP_3573	0.19	+0.7
4,053,691	+		PP_3573	0.20	-1.3
4,053,691	+		PP_3573	0.20	-0.9
4,053,692	-		PP_3573	0.20	+1.0
4,053,692	-		PP_3573	0.20	+0.9
4,053,695	+		PP_3573	0.20	-0.8
4,053,695	+		PP_3573	0.20	+1.0
4,053,695	+		PP_3573	0.20	-0.8
4,053,696	-		PP_3573	0.20	-1.2
4,053,696	-		PP_3573	0.20	-2.0
4,053,696	-		PP_3573	0.20	+0.8
4,053,703	+		PP_3573	0.21	-0.2
4,053,703	+		PP_3573	0.21	-0.1
4,053,704	-		PP_3573	0.21	+0.9
4,053,902	-		PP_3573	0.36	-0.0
4,054,006	+		PP_3573	0.44	-0.8
4,054,006	+		PP_3573	0.44	-1.3
4,054,007	-		PP_3573	0.44	-1.0
4,054,288	+		PP_3573	0.65	-2.5
4,054,288	+		PP_3573	0.65	-1.5
4,054,288	+		PP_3573	0.65	-1.7
4,054,289	-		PP_3573	0.65	-0.7
4,054,289	-		PP_3573	0.65	+0.5
4,054,318	+		PP_3573	0.68	-0.4
4,054,319	-		PP_3573	0.68	+0.3
4,054,445	+		PP_3573	0.77	+0.1
4,054,445	+		PP_3573	0.77	-0.2
4,054,445	+		PP_3573	0.77	-0.6
4,054,446	-		PP_3573	0.77	+1.2
4,054,446	-		PP_3573	0.77	-2.4
4,054,446	-		PP_3573	0.77	-0.3
4,054,487	+		PP_3573	0.80	+1.3
4,054,488	-		PP_3573	0.80	+0.6
4,054,552	+		PP_3573	0.85	-1.0
4,054,552	+		PP_3573	0.85	-0.8
4,054,751	+				-0.1
4,054,757	+				-0.4
4,054,758	-				-0.8
4,054,758	-				-1.7
4,054,851	+		PP_3574	0.21	-0.0
4,054,851	+		PP_3574	0.21	-0.7
4,054,851	+		PP_3574	0.21	+0.4
4,054,851	+		PP_3574	0.21	-0.3
4,054,851	+		PP_3574	0.21	+2.1
4,054,852	-		PP_3574	0.21	+0.3
4,055,001	+		PP_3574	0.59	+0.7
4,055,001	+		PP_3574	0.59	+0.8
4,055,001	+		PP_3574	0.59	+1.3
4,055,001	+		PP_3574	0.59	+0.9
4,055,001	+		PP_3574	0.59	-1.0
4,055,001	+		PP_3574	0.59	+1.4
4,055,002	-		PP_3574	0.59	+0.3
4,055,257	+				-0.8
4,055,257	+				-1.2
4,055,285	-				+0.9
4,055,285	-				-0.4
4,055,285	-				+0.5
4,055,289	-				+0.1
4,055,351	-				-0.5
4,055,438	-				+0.9
4,055,483	-				-0.0
4,055,603	-		PP_3575	0.14	-0.7
4,055,640	-		PP_3575	0.16	+0.8
4,055,640	-		PP_3575	0.16	+0.3
4,055,641	+		PP_3575	0.16	-0.9
4,055,641	+		PP_3575	0.16	-1.0
4,055,641	+		PP_3575	0.16	+1.3
4,055,641	+		PP_3575	0.16	+0.1
4,055,642	-		PP_3575	0.16	-1.0
4,055,642	-		PP_3575	0.16	-0.1
4,055,642	-		PP_3575	0.16	-0.5
4,055,642	-		PP_3575	0.16	-0.7
4,055,642	-		PP_3575	0.16	-0.5