Strain Fitness in Pseudomonas putida KT2440 around PP_3564

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,041,864	+				-1.8
4,041,865	-				-0.3
4,041,865	-				-1.2
4,041,865	-				+0.2
4,041,900	+				-1.3
4,042,150	+		PP_3563	0.28	-0.3
4,042,264	+		PP_3563	0.41	-0.4
4,042,571	-		PP_3563	0.77	+0.7
4,042,700	-				+0.1
4,042,706	+				+0.3
4,042,707	-				+0.6
4,042,732	+				-0.3
4,042,733	-				+1.6
4,042,762	+				+0.1
4,042,762	+				-1.0
4,042,763	-				+0.8
4,042,807	+				+0.3
4,042,842	+				-0.9
4,042,842	+				-1.1
4,042,842	+				+1.3
4,042,842	+				+0.9
4,042,843	-				-1.3
4,043,207	+		PP_3564	0.45	-0.8
4,043,208	-		PP_3564	0.45	-1.6
4,043,208	-		PP_3564	0.45	-1.5
4,043,225	+		PP_3564	0.47	+0.0
4,043,226	-		PP_3564	0.47	-2.1
4,043,274	+		PP_3564	0.52	+0.3
4,043,274	+		PP_3564	0.52	-1.3
4,043,275	-		PP_3564	0.52	-1.5
4,043,519	+		PP_3564	0.77	-2.0
4,043,520	-		PP_3564	0.77	-0.9
4,043,637	+		PP_3564	0.89	+0.3
4,043,780	+				-1.5
4,043,781	-				-0.5
4,043,810	+				-1.5
4,043,810	+				+1.3
4,043,810	+				+0.3
4,043,810	+				+0.6
4,043,811	-				+0.3
4,043,811	-				-0.6
4,043,811	-				-0.9
4,043,872	+				-1.7
4,043,872	+				-0.4
4,043,872	+				+0.5
4,043,873	-				-0.2
4,043,947	+		PP_3565	0.16	+0.1
4,043,948	-		PP_3565	0.16	+1.0
4,044,091	+		PP_3565	0.40	-0.5
4,044,116	+		PP_3565	0.44	+0.0
4,044,117	-		PP_3565	0.44	-0.3
4,044,117	-		PP_3565	0.44	+0.5
4,044,235	+		PP_3565	0.63	-0.7
4,044,235	+		PP_3565	0.63	+0.1
4,044,235	+		PP_3565	0.63	-0.1
4,044,235	+		PP_3565	0.63	+1.9
4,044,235	+		PP_3565	0.63	-1.4
4,044,235	+		PP_3565	0.63	+0.5
4,044,235	+		PP_3565	0.63	-0.2
4,044,235	+		PP_3565	0.63	-0.2
4,044,236	-		PP_3565	0.63	-0.7
4,044,236	-		PP_3565	0.63	-0.8
4,044,659	+		PP_3566	0.13	+2.0
4,044,659	+		PP_3566	0.13	-0.3
4,044,659	+		PP_3566	0.13	-0.9
4,044,660	-		PP_3566	0.13	-1.6
4,044,701	+		PP_3566	0.16	+1.2
4,044,701	+		PP_3566	0.16	-0.4
4,044,702	-		PP_3566	0.16	+0.2
4,044,702	-		PP_3566	0.16	-2.2