Strain Fitness in Pseudomonas putida KT2440 around PP_3562

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,040,107	+				-1.5
4,040,108	-				+0.1
4,040,121	-				-1.8
4,040,121	-				-1.6
4,040,199	+				+0.1
4,040,200	-				-0.4
4,040,263	+		PP_3561	0.16	+2.1
4,040,263	+		PP_3561	0.16	+0.7
4,040,263	+		PP_3561	0.16	-0.5
4,040,264	-		PP_3561	0.16	-1.4
4,040,266	+		PP_3561	0.16	-1.0
4,040,266	+		PP_3561	0.16	-0.3
4,040,266	+		PP_3561	0.16	+0.3
4,040,267	-		PP_3561	0.16	+0.7
4,040,267	-		PP_3561	0.16	+0.8
4,040,267	-		PP_3561	0.16	+0.4
4,040,267	-		PP_3561	0.16	-0.3
4,040,267	-		PP_3561	0.16	-0.9
4,040,324	+		PP_3561	0.22	+0.6
4,040,392	+		PP_3561	0.29	-2.1
4,040,464	+		PP_3561	0.37	+2.0
4,040,464	+		PP_3561	0.37	-0.2
4,040,465	-		PP_3561	0.37	-0.4
4,040,465	-		PP_3561	0.37	+0.9
4,040,495	-		PP_3561	0.40	+0.9
4,040,495	-		PP_3561	0.40	-0.8
4,040,672	+		PP_3561	0.59	-1.4
4,040,802	-		PP_3561	0.73	+0.1
4,040,944	+		PP_3561	0.88	+2.3
4,040,944	+		PP_3561	0.88	+0.2
4,040,944	+		PP_3561	0.88	-1.5
4,040,945	-		PP_3561	0.88	+0.1
4,040,945	-		PP_3561	0.88	+0.5
4,040,945	-		PP_3561	0.88	+0.5
4,041,041	+				-0.2
4,041,049	-				-0.9
4,041,085	+				-2.0
4,041,085	+				-0.5
4,041,085	+				-0.0
4,041,085	+				+1.1
4,041,086	-				+0.7
4,041,086	-				+0.9
4,041,153	-		PP_3562	0.15	+1.3
4,041,331	+		PP_3562	0.43	+0.2
4,041,331	+		PP_3562	0.43	-0.7
4,041,331	+		PP_3562	0.43	-1.6
4,041,332	-		PP_3562	0.43	-1.5
4,041,332	-		PP_3562	0.43	-1.4
4,041,332	-		PP_3562	0.43	-0.2
4,041,332	-		PP_3562	0.43	+0.8
4,041,339	-		PP_3562	0.44	-0.1
4,041,528	-		PP_3562	0.73	-0.0
4,041,528	-		PP_3562	0.73	-1.5
4,041,599	+		PP_3562	0.83	-0.1
4,041,642	-				-0.7
4,041,677	+				+0.2
4,041,677	+				-0.5
4,041,677	+				+1.6
4,041,678	-				+1.2
4,041,678	-				-0.3
4,041,864	+				-1.8
4,041,865	-				-0.3
4,041,865	-				-1.2
4,041,865	-				+0.2
4,041,900	+				-1.3
4,042,150	+		PP_3563	0.28	-0.3
4,042,264	+		PP_3563	0.41	-0.4
4,042,571	-		PP_3563	0.77	+0.7
4,042,700	-				+0.1
4,042,706	+				+0.3