Strain Fitness in Pseudomonas putida KT2440 around PP_3551

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,025,435	+		PP_3549	0.78	-0.3
4,025,435	+		PP_3549	0.78	+0.3
4,025,435	+		PP_3549	0.78	-0.7
4,025,483	-		PP_3549	0.82	+2.2
4,025,532	+		PP_3549	0.86	+0.7
4,025,533	-		PP_3549	0.86	-0.3
4,025,574	+		PP_3549	0.90	-0.6
4,025,704	+				+0.9
4,025,705	-				-1.1
4,025,705	-				-0.1
4,025,705	-				-1.7
4,025,714	-				+1.1
4,025,722	-				+1.7
4,026,049	-		PP_3550	0.68	+0.6
4,026,242	+				-0.4
4,026,243	-				+2.1
4,026,250	+				-0.9
4,026,250	+				-1.1
4,026,250	+				-1.3
4,026,277	-				+1.8
4,026,373	-				+2.1
4,026,562	-		PP_3551	0.29	-0.3
4,026,698	-		PP_3551	0.50	-1.9
4,026,994	+				+0.2
4,026,995	-				-2.0
4,026,995	-				+1.1
4,027,025	-				-1.0
4,027,167	-		PP_3552	0.10	-1.1
4,027,224	+		PP_3552	0.14	-2.2
4,027,225	-		PP_3552	0.14	+0.6
4,027,271	+		PP_3552	0.18	-0.6
4,027,271	+				+1.5
4,027,271	+		PP_3552	0.18	+1.1
4,027,271	+		PP_3552	0.18	+1.2
4,027,272	-		PP_3552	0.18	-1.1
4,027,272	-		PP_3552	0.18	+1.3
4,027,272	-		PP_3552	0.18	+0.1
4,027,272	-		PP_3552	0.18	-0.7
4,027,367	-		PP_3552	0.24	+0.3
4,027,367	-		PP_3552	0.24	-0.3
4,027,642	+		PP_3552	0.44	-1.1
4,027,642	+		PP_3552	0.44	+0.3
4,027,643	-		PP_3552	0.44	-2.7
4,027,643	-		PP_3552	0.44	+0.8
4,027,643	-		PP_3552	0.44	-1.3
4,027,926	+		PP_3552	0.64	+0.2
4,027,958	+		PP_3552	0.66	-0.1
4,027,958	+		PP_3552	0.66	-0.7
4,027,958	+		PP_3552	0.66	-0.5
4,027,958	+		PP_3552	0.66	-1.9
4,027,959	-		PP_3552	0.67	-1.4
4,027,959	-		PP_3552	0.67	+0.2
4,027,962	+		PP_3552	0.67	-0.1
4,027,962	+		PP_3552	0.67	-1.3
4,027,962	+		PP_3552	0.67	-0.2
4,027,962	+		PP_3552	0.67	+0.3
4,027,962	+		PP_3552	0.67	+1.6
4,027,962	+		PP_3552	0.67	-1.2
4,027,962	+		PP_3552	0.67	+2.4
4,027,962	+		PP_3552	0.67	+0.1
4,027,962	+		PP_3552	0.67	-0.6
4,027,962	+		PP_3552	0.67	+0.0
4,027,963	-		PP_3552	0.67	-3.3
4,027,963	-		PP_3552	0.67	+0.8
4,027,963	-		PP_3552	0.67	-0.4
4,027,963	-		PP_3552	0.67	-0.2
4,027,963	-		PP_3552	0.67	+0.3
4,027,963	-		PP_3552	0.67	+0.8
4,027,963	-		PP_3552	0.67	+0.3
4,027,963	-		PP_3552	0.67	-1.0