Strain Fitness in Pseudomonas putida KT2440 around PP_3448

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,904,526	+		PP_3446	0.86	-0.8
3,904,622	-				+0.6
3,904,683	-				+1.0
3,904,685	+				+0.3
3,904,686	-				-2.1
3,904,731	+				+0.1
3,904,731	+				-1.9
3,904,732	-				-1.2
3,904,788	+				-0.2
3,904,823	+				+0.8
3,904,823	+				-0.8
3,904,823	+				-0.7
3,904,824	-				-2.4
3,904,826	+				+0.4
3,904,827	-				-1.0
3,904,827	-				-1.7
3,904,827	-				-1.1
3,904,850	+				-1.6
3,904,851	-				-0.7
3,904,851	-				-1.4
3,904,871	-				-0.8
3,905,161	-		PP_3447	0.62	+1.1
3,905,350	+				+0.6
3,905,356	+				+0.8
3,905,356	+				+0.0
3,905,357	-				+0.6
3,905,417	+				-0.2
3,905,417	+				+0.0
3,905,417	+				-0.2
3,905,417	+				-0.7
3,905,417	+				+1.8
3,905,418	-				-1.5
3,905,418	-				+0.2
3,905,421	+				+1.8
3,905,422	-				-0.6
3,905,428	+				-0.6
3,905,428	+				-0.6
3,905,429	-				-1.6
3,905,429	-				+1.0
3,905,429	-				+3.5
3,905,477	+				+1.8
3,905,527	-				-0.0
3,905,546	+				-0.2
3,905,547	-				-0.9
3,905,637	-				-1.5
3,905,637	-				+0.8
3,905,637	-				-0.3
3,905,637	-				+0.1
3,905,672	+				+0.2
3,905,708	+				-1.1
3,905,708	+				-0.3
3,905,708	+				+1.4
3,905,709	-				-0.3
3,905,808	-		PP_3448	0.13	+1.2
3,905,816	+		PP_3448	0.14	+2.0
3,905,838	-		PP_3448	0.15	-1.2
3,906,068	+		PP_3448	0.25	-0.8
3,906,068	+		PP_3448	0.25	+1.0
3,906,069	-		PP_3448	0.25	+2.1
3,906,069	-		PP_3448	0.25	+0.3
3,906,069	-		PP_3448	0.25	+0.8
3,906,107	+		PP_3448	0.27	+0.3
3,906,107	+		PP_3448	0.27	+0.4
3,906,108	-		PP_3448	0.27	-1.3
3,906,108	-		PP_3448	0.27	+1.2
3,906,108	-		PP_3448	0.27	-0.1
3,906,149	+		PP_3448	0.29	-1.6
3,906,150	-		PP_3448	0.29	+1.5
3,906,150	-		PP_3448	0.29	-1.5
3,906,300	+		PP_3448	0.36	-0.8
3,906,300	+		PP_3448	0.36	-0.4
3,906,300	+		PP_3448	0.36	+0.5
3,906,301	-		PP_3448	0.36	+0.1
3,906,575	+		PP_3448	0.49	+0.4
3,906,575	+		PP_3448	0.49	+1.0
3,906,582	+		PP_3448	0.49	-1.0
3,906,583	-		PP_3448	0.49	+0.1
3,906,583	-		PP_3448	0.49	-1.9
3,906,639	+		PP_3448	0.52	+0.5
3,906,806	+		PP_3448	0.59	+0.3
3,906,806	+		PP_3448	0.59	+0.7
3,906,898	-		PP_3448	0.64	+0.9
3,906,898	-		PP_3448	0.64	+1.1
3,907,488	+				-0.6
3,907,813	+		PP_3449	0.29	-1.4
3,907,940	-		PP_3449	0.59	+0.2
3,907,971	-		PP_3449	0.66	-0.4
3,908,093	-				+0.2
3,908,109	+				+0.7
3,908,110	-				+0.2
3,908,110	-				-0.6
3,908,322	+		PP_3450	0.10	-0.1
3,908,322	+		PP_3450	0.10	+1.1
3,908,322	+		PP_3450	0.10	-0.8
3,908,322	+		PP_3450	0.10	-2.2
3,908,322	+		PP_3450	0.10	+1.0
3,908,323	-		PP_3450	0.10	-1.1
3,908,323	-		PP_3450	0.10	+0.1
3,908,323	-		PP_3450	0.10	-1.0
3,908,676	+		PP_3450	0.24	+0.6