Strain Fitness in Pseudomonas putida KT2440 around PP_3412

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,859,835	-		PP_3410	0.89	+1.4
3,859,853	+				+1.5
3,859,853	+				+0.8
3,859,878	+				+0.2
3,859,878	+				-1.0
3,859,878	+				+0.7
3,859,878	+				-1.8
3,859,879	-				+1.0
3,859,996	+				+1.1
3,860,140	+		PP_3411	0.63	-0.3
3,860,200	+		PP_3411	0.88	-2.0
3,860,288	-				-0.6
3,860,303	+				+0.5
3,860,303	+				+0.3
3,860,304	-				+2.8
3,860,304	-				-0.3
3,860,304	-				+1.0
3,860,304	-				-0.6
3,860,304	-				-1.5
3,860,304	-				+0.7
3,860,328	+				-0.4
3,860,328	+				+1.6
3,860,329	-				-0.3
3,860,363	-				+1.3
3,860,399	+				+0.2
3,860,399	+				+0.9
3,860,400	-				-0.3
3,860,434	+				-0.9
3,860,482	+				+0.8
3,860,482	+				-0.6
3,860,483	-				+0.6
3,860,505	+				+0.6
3,860,572	-		PP_3412	0.20	-0.0
3,860,595	+		PP_3412	0.24	-0.5
3,860,596	-		PP_3412	0.24	+1.2
3,860,711	+		PP_3412	0.42	+0.2
3,860,711	+		PP_3412	0.42	-0.6
3,860,711	+		PP_3412	0.42	+1.1
3,860,711	+		PP_3412	0.42	+1.0
3,860,711	+		PP_3412	0.42	-0.2
3,860,712	-		PP_3412	0.43	+0.1
3,860,740	-		PP_3412	0.47	+1.4
3,860,810	+		PP_3412	0.59	+1.2
3,860,811	-		PP_3412	0.59	+0.5
3,860,981	+		PP_3412	0.86	+2.7
3,861,059	+				+0.7
3,861,060	-				+1.2
3,861,060	-				+0.6
3,861,060	-				-1.6
3,861,203	-				-0.6
3,861,247	+				-1.1
3,861,248	-				-1.1
3,861,370	+				-1.0
3,861,371	-				-0.7
3,861,371	-				+0.2
3,861,437	+		PP_3413	0.11	-0.3
3,861,438	-		PP_3413	0.11	-1.2
3,861,438	-		PP_3413	0.11	-1.0
3,861,473	-		PP_3413	0.12	+0.3
3,861,473	-		PP_3413	0.12	-0.9
3,861,489	+		PP_3413	0.13	+0.5
3,861,489	+		PP_3413	0.13	-1.1
3,861,490	-		PP_3413	0.13	+1.2
3,861,490	-		PP_3413	0.13	-2.0
3,861,585	+		PP_3413	0.15	+0.3
3,861,615	+		PP_3413	0.16	+1.1
3,861,639	+		PP_3413	0.17	-0.2
3,861,693	+		PP_3413	0.19	+0.4
3,861,694	-		PP_3413	0.19	-1.2
3,861,694	-		PP_3413	0.19	-2.0
3,861,720	+		PP_3413	0.20	+1.0
3,861,720	+		PP_3413	0.20	-0.3
3,861,720	+		PP_3413	0.20	+0.8
3,861,721	-		PP_3413	0.20	-1.8
3,861,721	-		PP_3413	0.20	+0.2
3,861,856	+		PP_3413	0.24	-0.2
3,861,856	+		PP_3413	0.24	+0.5
3,861,902	+		PP_3413	0.25	+0.3
3,861,903	-		PP_3413	0.25	-0.6
3,861,980	+		PP_3413	0.27	-1.4
3,861,988	+		PP_3413	0.28	-0.3
3,861,988	+		PP_3413	0.28	+1.6
3,861,989	-		PP_3413	0.28	-0.6
3,861,999	-		PP_3413	0.28	+0.9
3,861,999	-		PP_3413	0.28	+0.2