Strain Fitness in Pseudomonas putida KT2440 around PP_3297

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,729,334	-		PP_3295	0.63	+0.4
3,729,354	-		PP_3295	0.67	-2.0
3,729,371	-		PP_3295	0.71	-2.5
3,729,492	+				+1.8
3,729,493	-				+1.8
3,729,494	+				-0.5
3,729,494	+				+1.1
3,729,495	-				-0.8
3,729,562	-		PP_3296	0.11	+0.6
3,729,661	-		PP_3296	0.34	+1.2
3,729,661	-		PP_3296	0.34	-0.3
3,729,700	+		PP_3296	0.43	+1.1
3,729,701	-		PP_3296	0.43	+2.2
3,729,701	-		PP_3296	0.43	-0.9
3,729,701	-		PP_3296	0.43	-2.0
3,729,721	+		PP_3296	0.48	-1.8
3,729,721	+		PP_3296	0.48	+0.6
3,729,722	-		PP_3296	0.48	-0.0
3,729,726	+		PP_3296	0.49	+0.2
3,729,727	-		PP_3296	0.49	+0.4
3,729,727	-		PP_3296	0.49	+0.3
3,729,727	-		PP_3296	0.49	-0.8
3,729,810	+		PP_3296	0.69	-0.1
3,729,811	-		PP_3296	0.69	-0.9
3,729,835	-		PP_3296	0.74	-1.8
3,729,901	+		PP_3296	0.89	-0.9
3,729,901	+		PP_3296	0.89	-1.1
3,729,901	+		PP_3296	0.89	+0.8
3,729,999	-				-0.2
3,730,005	-				-1.7
3,730,016	-				+0.9
3,730,028	+				-1.7
3,730,043	+				+0.3
3,730,047	-				-2.2
3,730,049	-				+0.5
3,730,083	-				+0.6
3,730,083	-				-0.8
3,730,119	+				+0.3
3,730,173	+				-0.6
3,730,174	-				+1.0
3,730,174	-				+0.4
3,730,215	-				+0.6
3,730,218	-				+0.5
3,730,218	-				-0.6
3,730,218	-				+0.2
3,730,218	-				-1.3
3,730,222	+				+0.8
3,730,223	-				+0.1
3,730,223	-				+1.0
3,730,240	-		PP_3297	0.12	-2.1
3,730,339	+		PP_3297	0.31	-2.0
3,730,355	+		PP_3297	0.34	-1.0
3,730,356	-		PP_3297	0.34	-0.9
3,730,357	+		PP_3297	0.34	-0.5
3,730,395	-		PP_3297	0.41	-0.7
3,730,395	-		PP_3297	0.41	-2.2
3,730,395	-		PP_3297	0.41	-0.2
3,730,481	-		PP_3297	0.58	-0.9
3,730,481	-		PP_3297	0.58	+0.1
3,730,562	+				+0.9
3,730,643	+		PP_3297	0.88	-0.3
3,730,643	+				+1.0
3,730,643	+		PP_3297	0.88	-0.4
3,730,643	+		PP_3297	0.88	+0.4
3,730,644	-		PP_3297	0.88	-0.4
3,730,644	-		PP_3297	0.88	-0.5
3,730,644	-		PP_3297	0.88	-0.2
3,730,683	-				-1.4
3,730,683	-				-1.0
3,730,683	-				+0.6
3,730,683	-				+0.9
3,730,742	+				-0.9
3,730,768	-				+1.0
3,730,816	+				-0.6
3,730,816	+				+1.3
3,730,817	-				+0.0
3,730,817	-				+0.5
3,730,817	-				+0.6
3,730,823	+				+0.1
3,730,823	+				+0.5
3,730,823	+				-2.1
3,730,824	-				+0.8
3,730,824	-				+0.7
3,730,842	+				+1.1
3,730,842	+				-1.9
3,730,843	-				+2.4
3,730,843	-				+3.0
3,730,843	-				-0.3
3,730,993	-				+1.5
3,731,055	+				-0.2
3,731,055	+				+2.8
3,731,055	+				-0.8
3,731,056	-				-2.6
3,731,059	+				-0.3
3,731,059	+				+1.0
3,731,060	-				+0.1
3,731,101	-				-0.2
3,731,101	-				+0.8
3,731,162	+		PP_3298	0.12	-0.0
3,731,163	-		PP_3298	0.12	+0.1
3,731,233	+		PP_3298	0.26	+0.5
3,731,248	-		PP_3298	0.29	+0.5
3,731,257	-		PP_3298	0.31	-1.9
3,731,285	-		PP_3298	0.36	+1.1
3,731,290	+		PP_3298	0.37	+0.2
3,731,290	+		PP_3298	0.37	+0.1
3,731,290	+		PP_3298	0.37	+0.0
3,731,291	-		PP_3298	0.37	-1.3
3,731,291	-		PP_3298	0.37	-1.3
3,731,291	-		PP_3298	0.37	-1.3
3,731,291	-		PP_3298	0.37	-0.8
3,731,291	-		PP_3298	0.37	+1.2
3,731,291	-		PP_3298	0.37	+1.4
3,731,396	+		PP_3298	0.58	-0.3
3,731,397	-		PP_3298	0.58	+1.1
3,731,435	-		PP_3298	0.66	-2.0
3,731,572	-				+0.6
3,731,616	+				-1.7
3,731,616	+				+0.4
3,731,617	-				-0.1
3,731,617	-				-0.4
3,731,651	+				-0.2
3,731,651	+				+0.3
3,731,652	-				+0.8