Strain Fitness in Pseudomonas putida KT2440 around PP_3290

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,723,485	-		PP_3288	0.80	+0.3
3,723,485	-		PP_3288	0.80	-0.8
3,723,485	-				+1.9
3,723,493	-		PP_3288	0.81	+0.3
3,723,547	-		PP_3288	0.87	+1.0
3,723,563	+		PP_3288	0.88	-2.1
3,723,614	-				-0.3
3,723,798	-		PP_3289	0.18	+0.2
3,723,947	-		PP_3289	0.45	-1.1
3,723,957	-		PP_3289	0.47	-0.5
3,723,991	+		PP_3289	0.53	-0.5
3,724,010	+		PP_3289	0.56	+0.7
3,724,028	+		PP_3289	0.60	+0.2
3,724,029	-		PP_3289	0.60	-0.5
3,724,059	+		PP_3289	0.65	+1.6
3,724,060	-		PP_3289	0.66	+1.1
3,724,109	+		PP_3289	0.74	-0.5
3,724,192	+		PP_3289	0.90	+0.0
3,724,290	+				+1.3
3,724,440	+				+0.5
3,724,441	-				-0.7
3,724,673	+		PP_3290	0.26	+0.5
3,724,673	+		PP_3290	0.26	-0.1
3,724,674	-		PP_3290	0.26	-0.3
3,724,731	+		PP_3290	0.32	-0.1
3,724,732	-		PP_3290	0.32	+1.4
3,724,732	-		PP_3290	0.32	+0.6
3,724,984	+		PP_3290	0.60	-0.7
3,724,985	-		PP_3290	0.60	+0.8
3,725,019	+		PP_3290	0.63	-1.1
3,725,036	-		PP_3290	0.65	+1.0
3,725,036	-		PP_3290	0.65	+0.0
3,725,254	+		PP_3290	0.89	+1.0
3,725,254	+		PP_3290	0.89	+1.5
3,725,254	+		PP_3290	0.89	-1.3
3,725,255	-		PP_3290	0.89	+1.1
3,725,276	+				-1.2
3,725,323	+				-0.6
3,725,552	+		PP_3291	0.15	+0.4
3,725,552	+		PP_3291	0.15	+1.1
3,725,553	-		PP_3291	0.15	-0.1
3,725,553	-		PP_3291	0.15	-0.7
3,725,556	+		PP_3291	0.15	-0.4
3,725,556	+		PP_3291	0.15	-1.8
3,725,556	+		PP_3291	0.15	-1.1
3,725,556	+		PP_3291	0.15	+0.8
3,725,557	-		PP_3291	0.15	-1.6
3,725,557	-		PP_3291	0.15	+0.2
3,725,557	-		PP_3291	0.15	-1.2
3,725,595	-		PP_3291	0.18	-0.3
3,725,595	-		PP_3291	0.18	-1.5
3,725,691	-		PP_3291	0.25	+0.2
3,725,691	-		PP_3291	0.25	-1.3
3,725,721	-		PP_3291	0.27	+1.8
3,725,722	+		PP_3291	0.27	+0.9
3,725,723	-		PP_3291	0.27	+0.6
3,725,723	-		PP_3291	0.27	+0.4
3,725,830	+		PP_3291	0.35	-0.3
3,725,830	+		PP_3291	0.35	+0.0
3,725,831	-		PP_3291	0.35	-0.7
3,725,831	-		PP_3291	0.35	-1.5
3,725,968	+				+0.1
3,725,968	+		PP_3291	0.45	-1.6
3,725,968	+		PP_3291	0.45	+1.2
3,725,972	+		PP_3291	0.46	+0.1
3,725,972	+		PP_3291	0.46	+0.8
3,725,973	-		PP_3291	0.46	+0.9
3,726,012	-		PP_3291	0.49	-1.2
3,726,063	+		PP_3291	0.52	+0.2
3,726,101	+		PP_3291	0.55	-2.1
3,726,101	+		PP_3291	0.55	+0.8
3,726,101	+		PP_3291	0.55	-0.5
3,726,101	+		PP_3291	0.55	-0.4
3,726,101	+		PP_3291	0.55	-2.3
3,726,101	+		PP_3291	0.55	+0.4
3,726,102	-		PP_3291	0.55	-0.1
3,726,102	-		PP_3291	0.55	-0.2
3,726,102	-		PP_3291	0.55	-1.1
3,726,104	+		PP_3291	0.55	-1.0
3,726,104	+		PP_3291	0.55	-0.2
3,726,104	+		PP_3291	0.55	-1.9
3,726,104	+		PP_3291	0.55	-1.2
3,726,104	+		PP_3291	0.55	-0.2
3,726,104	+		PP_3291	0.55	-0.7
3,726,104	+		PP_3291	0.55	+0.9
3,726,104	+		PP_3291	0.55	+1.4
3,726,104	+		PP_3291	0.55	+1.7
3,726,104	+		PP_3291	0.55	-0.4
3,726,105	-		PP_3291	0.55	-0.2
3,726,105	-		PP_3291	0.55	+0.5
3,726,105	-		PP_3291	0.55	+0.6
3,726,110	+		PP_3291	0.56	-0.4
3,726,111	-		PP_3291	0.56	+0.6
3,726,111	-		PP_3291	0.56	-1.0
3,726,111	-		PP_3291	0.56	+0.9
3,726,111	-		PP_3291	0.56	+0.4
3,726,152	+		PP_3291	0.59	-1.1
3,726,153	-		PP_3291	0.59	-1.0
3,726,153	-		PP_3291	0.59	-0.5