Strain Fitness in Pseudomonas putida KT2440 around PP_3288

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,721,877	+		PP_3287	0.59	-1.2
3,721,878	-		PP_3287	0.59	-1.7
3,721,878	-		PP_3287	0.59	-0.9
3,721,958	+		PP_3287	0.69	-1.4
3,721,958	+		PP_3287	0.69	+0.8
3,721,959	-		PP_3287	0.69	+0.7
3,721,965	+				+1.2
3,721,966	-		PP_3287	0.70	-0.9
3,721,966	-		PP_3287	0.70	+0.8
3,722,033	+		PP_3287	0.79	-0.1
3,722,141	-				-1.1
3,722,141	-				+0.4
3,722,141	-				+0.1
3,722,223	+				+1.1
3,722,254	-		PP_5598	0.19	-0.8
3,722,340	+		PP_5598	0.54	-2.2
3,722,341	-		PP_5598	0.54	+0.5
3,722,376	+		PP_5598	0.68	+0.4
3,722,430	+				-1.0
3,722,444	+				-1.9
3,722,473	+				-0.7
3,722,473	+				-1.4
3,722,474	-				+0.4
3,722,576	+				-1.5
3,722,582	+				+0.6
3,722,675	+				+0.7
3,722,675	+				-0.5
3,722,697	+				-1.0
3,722,697	+				+0.1
3,722,698	-				-1.1
3,722,698	-				+0.6
3,722,698	-				-0.8
3,722,714	-				-2.7
3,722,714	-				+0.9
3,722,717	+				-1.5
3,722,717	+				+0.2
3,722,717	+				+0.4
3,722,717	+				+2.3
3,722,718	-				-1.3
3,722,718	-				+0.4
3,722,718	-				+0.3
3,722,718	-				-1.9
3,722,721	+				+0.6
3,722,804	+				-1.1
3,722,804	+				+0.8
3,722,804	+				-0.1
3,722,804	+				-0.1
3,722,804	+				-0.5
3,722,804	+				+0.5
3,722,934	-		PP_3288	0.20	+0.1
3,722,934	-		PP_3288	0.20	+0.2
3,723,048	+		PP_3288	0.33	+1.9
3,723,049	-		PP_3288	0.33	-0.9
3,723,049	-		PP_3288	0.33	+1.7
3,723,137	-		PP_3288	0.42	+0.7
3,723,162	+		PP_3288	0.45	+1.9
3,723,163	-		PP_3288	0.45	-1.1
3,723,326	+				+1.8
3,723,326	+		PP_3288	0.63	+0.2
3,723,326	+		PP_3288	0.63	-0.0
3,723,326	+		PP_3288	0.63	-1.3
3,723,327	-		PP_3288	0.63	+0.8
3,723,327	-		PP_3288	0.63	+0.6
3,723,327	-		PP_3288	0.63	+1.6
3,723,350	+		PP_3288	0.65	+1.0
3,723,351	-		PP_3288	0.65	+0.0
3,723,485	-		PP_3288	0.80	+0.3
3,723,485	-		PP_3288	0.80	-0.8
3,723,485	-				+1.9
3,723,493	-		PP_3288	0.81	+0.3
3,723,547	-		PP_3288	0.87	+1.0
3,723,563	+		PP_3288	0.88	-2.1
3,723,614	-				-0.3
3,723,798	-		PP_3289	0.18	+0.2
3,723,947	-		PP_3289	0.45	-1.1
3,723,957	-		PP_3289	0.47	-0.5
3,723,991	+		PP_3289	0.53	-0.5
3,724,010	+		PP_3289	0.56	+0.7
3,724,028	+		PP_3289	0.60	+0.2
3,724,029	-		PP_3289	0.60	-0.5
3,724,059	+		PP_3289	0.65	+1.6
3,724,060	-		PP_3289	0.66	+1.1
3,724,109	+		PP_3289	0.74	-0.5
3,724,192	+		PP_3289	0.90	+0.0
3,724,290	+				+1.3
3,724,440	+				+0.5
3,724,441	-				-0.7