Strain Fitness in Pseudomonas putida KT2440 around PP_3266

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,699,569	-				-0.7
3,699,569	-				-0.3
3,699,614	+				+0.1
3,699,615	-				-0.1
3,699,615	-				+0.6
3,699,615	-				+0.1
3,699,615	-				+1.5
3,699,696	+				-0.2
3,699,697	-				+0.7
3,699,725	-				+0.6
3,699,769	+		PP_3265	0.13	-1.8
3,699,770	-		PP_3265	0.13	+0.8
3,699,997	-		PP_3265	0.42	+0.9
3,700,163	-		PP_3265	0.64	-0.9
3,700,201	+		PP_3265	0.69	+0.2
3,700,525	-				-1.6
3,700,564	-		PP_3266	0.12	+2.1
3,700,564	-		PP_3266	0.12	+1.2
3,700,651	+		PP_3266	0.20	-1.7
3,700,685	-		PP_3266	0.23	+0.1
3,700,686	+		PP_3266	0.23	-1.8
3,700,699	-		PP_3266	0.25	+1.8
3,700,699	-		PP_3266	0.25	-1.9
3,700,699	-		PP_3266	0.25	-1.8
3,700,707	-		PP_3266	0.25	-0.5
3,700,707	-		PP_3266	0.25	-1.6
3,700,707	-		PP_3266	0.25	-1.1
3,700,729	-		PP_3266	0.28	-0.3
3,700,744	+		PP_3266	0.29	+0.1
3,700,758	+		PP_3266	0.30	-0.7
3,700,758	+		PP_3266	0.30	-1.1
3,700,759	-		PP_3266	0.30	-1.2
3,700,759	-		PP_3266	0.30	-1.5
3,700,811	+		PP_3266	0.35	-0.3
3,701,128	+		PP_3266	0.65	-0.5
3,701,130	+		PP_3266	0.66	-1.5
3,701,130	+		PP_3266	0.66	+0.2
3,701,131	-		PP_3266	0.66	+0.4
3,701,131	-		PP_3266	0.66	-2.1
3,701,131	-		PP_3266	0.66	+0.6
3,701,190	+		PP_3266	0.71	-0.7
3,701,335	+		PP_3266	0.85	-0.4
3,701,336	-		PP_3266	0.85	+0.4
3,701,627	+				-0.2
3,701,627	+				-0.5
3,701,628	-				+1.7
3,701,628	-				-0.1
3,701,628	-				-1.4
3,701,773	-		PP_3267	0.34	+1.3
3,701,773	-		PP_3267	0.34	-0.4
3,701,807	+		PP_3267	0.40	+1.2
3,701,843	+		PP_3267	0.46	+0.6
3,701,974	-		PP_3267	0.68	-0.7
3,701,989	-		PP_3267	0.70	-1.3
3,701,989	-		PP_3267	0.70	-1.0
3,702,040	+		PP_3267	0.79	-0.4
3,702,041	-		PP_3267	0.79	-0.1
3,702,052	+		PP_3267	0.81	+0.5
3,702,052	+		PP_3267	0.81	-0.6
3,702,053	-		PP_3267	0.81	-0.7
3,702,053	-		PP_3267	0.81	+0.9
3,702,053	-		PP_3267	0.81	-0.6
3,702,053	-		PP_3267	0.81	+0.1
3,702,166	-				+0.7
3,702,338	+		PP_3268	0.42	-1.7
3,702,338	+		PP_3268	0.42	-0.5
3,702,339	-		PP_3268	0.43	+1.0
3,702,339	-		PP_3268	0.43	-0.0
3,702,394	+		PP_3268	0.56	-1.8
3,702,435	+		PP_3268	0.67	-1.7
3,702,435	+		PP_3268	0.67	-0.1
3,702,435	+		PP_3268	0.67	-1.4
3,702,435	+		PP_3268	0.67	+0.2
3,702,435	+		PP_3268	0.67	-0.6
3,702,435	+		PP_3268	0.67	+0.2
3,702,435	+		PP_3268	0.67	+0.8
3,702,435	+		PP_3268	0.67	+0.1
3,702,435	+		PP_3268	0.67	-1.1
3,702,436	-		PP_3268	0.67	+0.8
3,702,436	-		PP_3268	0.67	-0.7
3,702,436	-		PP_3268	0.67	+1.5
3,702,436	-		PP_3268	0.67	+1.3
3,702,436	-				+2.4
3,702,436	-		PP_3268	0.67	-1.1
3,702,436	-		PP_3268	0.67	+0.9
3,702,436	-		PP_3268	0.67	-1.2