Strain Fitness in Pseudomonas putida KT2440 around PP_3201

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,631,884	+		PP_5590	0.57	-1.9
3,631,884	+		PP_5590	0.57	-1.5
3,631,885	-				+2.5
3,631,885	-		PP_5590	0.57	+0.4
3,631,980	+		PP_5590	0.64	-0.2
3,632,040	+		PP_5590	0.68	-0.3
3,632,040	+		PP_5590	0.68	+0.1
3,632,040	+		PP_5590	0.68	-1.2
3,632,040	+		PP_5590	0.68	+0.7
3,632,041	-		PP_5590	0.68	-1.3
3,632,041	-		PP_5590	0.68	+0.6
3,632,041	-		PP_5590	0.68	+1.1
3,632,049	+		PP_5590	0.69	+0.2
3,632,049	+		PP_5590	0.69	+0.7
3,632,205	+		PP_5590	0.80	+1.3
3,632,206	-		PP_5590	0.80	-1.4
3,632,206	-		PP_5590	0.80	-1.9
3,632,206	-		PP_5590	0.80	-1.6
3,632,206	-		PP_5590	0.80	+1.3
3,632,208	+		PP_5590	0.80	-0.3
3,632,209	-		PP_5590	0.81	-2.1
3,632,250	+		PP_5590	0.84	+1.2
3,632,251	-		PP_5590	0.84	+0.2
3,632,251	-		PP_5590	0.84	-1.8
3,632,403	+				-0.8
3,632,507	+				-0.5
3,632,508	-				-0.1
3,632,545	-				+0.3
3,632,545	-				-0.6
3,633,043	-		PP_3201	0.48	-1.9
3,633,043	-		PP_3201	0.48	+0.9
3,633,129	+		PP_3201	0.56	+0.6
3,633,130	-		PP_3201	0.57	-1.4
3,633,159	+		PP_3201	0.59	-1.4
3,633,159	+				+0.9
3,633,160	-		PP_3201	0.59	-0.2
3,633,213	+		PP_3201	0.64	-0.9
3,633,214	-		PP_3201	0.65	-1.1
3,633,813	+				-0.3
3,633,814	-				+1.2
3,633,814	-				-0.6
3,633,884	+		PP_3202	0.11	-0.3
3,633,892	-		PP_3202	0.12	-0.9
3,633,903	+		PP_3202	0.12	+1.3
3,633,938	-		PP_3202	0.14	+0.6
3,633,939	+		PP_3202	0.14	+0.2
3,633,939	+		PP_3202	0.14	-0.6
3,633,939	+		PP_3202	0.14	-0.7
3,633,939	+		PP_3202	0.14	+0.7
3,634,200	+		PP_3202	0.24	-0.9
3,634,201	-		PP_3202	0.24	-0.5
3,634,368	+		PP_3202	0.31	+1.3
3,634,368	+		PP_3202	0.31	-0.2
3,634,369	-		PP_3202	0.31	-1.7
3,634,369	-		PP_3202	0.31	+0.8
3,634,375	-		PP_3202	0.31	-0.1